Pairwise Alignments

Query, 592 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  260 bits (665), Expect = 8e-74
 Identities = 145/340 (42%), Positives = 213/340 (62%), Gaps = 15/340 (4%)

Query: 261 ANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRR 320
           A AP   H   ++G    M +L  +I+ +APS ++V++ GESGTGKE+VARA+H  S R 
Sbjct: 141 AGAPGASH--GIIGRSAPMHELVEMIATVAPSEATVLITGESGTGKELVARALHAASHRS 198

Query: 321 NKPFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLM 380
            KP + +NCAA+ E LLESELFG+ +GAFTGA    +   +QA + GTLFLDEIG+MPL 
Sbjct: 199 AKPLVTVNCAALTETLLESELFGHERGAFTGADRRREGRFVQA-DGGTLFLDEIGEMPLT 257

Query: 381 LQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPIT 440
           LQAKLLRA++  E+  +G+ +P+ VD+R+I+ATN++L +  A G+FREDL+YRLNVI + 
Sbjct: 258 LQAKLLRALQQGEVQRVGSDTPLTVDVRVIAATNRDLREEAAAGRFREDLYYRLNVIAVH 317

Query: 441 LPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL 500
           +P LRER  D+ LL  +FL  +T +      G  P  +++L +H WPGN+REL N +E  
Sbjct: 318 VPALRERAGDVPLLAAFFLDRYTEKNRKHLKGFTPQAMDMLLRHDWPGNVRELENAIERA 377

Query: 501 VNVVPSGEVIDSTLLPPNLLNN-----GTTEQSDVTEVSEAHLSLDDAG-----GTALEE 550
           V ++ +G+ +    LP +         G+   +   E    +   D  G     G +LE+
Sbjct: 378 V-ILATGDYVTERELPLHFGGGGSGIAGSGGSAGTGEAGAGNAPADGDGLAPYAGLSLED 436

Query: 551 MEKQMIREAL-SRHNSKKQVADELGIGIATLYRKIKKYEL 589
           +E++ I   L    ++K + A  LGI  ATL+ K+KKY+L
Sbjct: 437 LERRAIIATLRETADNKSEAARRLGITRATLHNKLKKYDL 476