Pairwise Alignments

Query, 592 a.a., predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  258 bits (659), Expect = 4e-73
 Identities = 142/317 (44%), Positives = 203/317 (64%), Gaps = 13/317 (4%)

Query: 272 LVGECRVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAA 331
           ++G+ + M +L  +++ IAPS ++V+V GESGTGKE++ARAIH  S RR+ P++ +NCAA
Sbjct: 147 IIGQSQSMHRLMDMMASIAPSEATVLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAA 206

Query: 332 IPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEA 391
           + E LLESELFG+ KGAFTGA    + G  Q+A+ GT+FLDEIG+  L +QAKLLRAI+ 
Sbjct: 207 LTETLLESELFGHEKGAFTGAEKR-REGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQE 265

Query: 392 REILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQEDI 451
           REI  +G+   ++VD+RII+ATN++L   +  G+FR+DL+YRLNV+ + +PPLRER EDI
Sbjct: 266 REIQRVGSDQTLRVDVRIIAATNRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDI 325

Query: 452 ELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGEVID 511
            LL  +FL   T + G    G  P  ++ L KH WPGN+REL N  E  V V+  GE I 
Sbjct: 326 PLLAGHFLRRFTEKNGKRVKGFTPQAMDRLLKHDWPGNVRELENAAERAV-VLLVGEYIS 384

Query: 512 STLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREAL-SRHNSKKQVA 570
              LP  +               +A  ++    G  LEE+E+  I +A+ +   +K + A
Sbjct: 385 ERELPHAIAGGD----------GDATCAVPRFNGMTLEEIERAAILDAMDASEGNKSEAA 434

Query: 571 DELGIGIATLYRKIKKY 587
             LGI   TL+ K+ +Y
Sbjct: 435 RRLGITRKTLHAKLNRY 451