Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 684 a.a., exodeoxyribonuclease V subunit alpha from Rahnella sp. WP5

 Score =  410 bits (1054), Expect = e-119
 Identities = 283/674 (41%), Positives = 375/674 (55%), Gaps = 83/674 (12%)

Query: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61
           QLL + VE   LR LD   V F    A D HP + LA AL S+  G GHVCL L    ++
Sbjct: 11  QLLASWVECGWLRELDRALVTFLAKEAPDAHPLLLLATALTSYQLGRGHVCLDLQATLDD 70

Query: 62  EA---SHP----------LLATCVSEIGELQNWEECLLASQAVSRGDEPTPMILCGDRLY 108
            A   S P          +    V +   LQ W   L+    V   +  +P++L G RLY
Sbjct: 71  SAFSLSLPPEGDHADGAVIRPAAVLDDLSLQEWLAALVHPTLVGHHEGNSPLVLTGQRLY 130

Query: 109 LNRMWCNERTVA-----RFFNEVNHAIEVDEALLAQTLDKLFPV---SDEINWQKVAAAV 160
           L R W  E+ V      R      H + V+   L   L  LFP    SD  NWQK+A A+
Sbjct: 131 LRRYWQYEQNVRAAIEQRLARSALHTLPVES--LRAPLTALFPADAKSDIANWQKLACAL 188

Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMA---DGERCRIRLAAPTGKAAARLTESLG 217
           A     S+I+GGPGTGKTTTV +LLA L  +A   +G+  RIRLAAPTGKAAARL ES+ 
Sbjct: 189 AAGSAFSIITGGPGTGKTTTVVRLLALLQTLALEENGQPLRIRLAAPTGKAAARLNESIA 248

Query: 218 KALRQLPLT-----DEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEAS 272
            A+ +L L+     +  ++ I  D  TLHRLLG++P ++  RHH GNPL LDVLVVDEAS
Sbjct: 249 GAVSKLDLSALGNGNAVRESINTDVVTLHRLLGSRPDTRHFRHHPGNPLMLDVLVVDEAS 308

Query: 273 MIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-LSR 331
           M+DL MM+ L+ ALP+ AR+I LGD+DQLASVEAGA+L ++C  AN G      R  L  
Sbjct: 309 MVDLEMMAALLAALPEQARLILLGDKDQLASVEAGALLSELCQRANGGHYLPHTRDWLQS 368

Query: 332 LTGTHVPAG-TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDF 390
           +TG  VP      +  ++  ++ +L+ SYRF + SGIGQLA A+N GD  A+K V++  +
Sbjct: 369 VTGEQVPDSLVDPQGTAMDQAVVMLRHSYRFDAQSGIGQLAEAVNDGDVKALKQVWKHGY 428

Query: 391 TDIEKRLLQSGED----------------YIAMLE--EALAGYGRYLD-LLQARA---EP 428
            D+ +  L + +D                  A  E  E   GY  YL+ ++QAR    EP
Sbjct: 429 ADLAQLTLSADDDAELRDWVVKGGAKQFPTAARREGVEPPVGYQHYLNVMIQARPADNEP 488

Query: 429 D--------LIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR 480
                     ++ A++++QLLCALR G +GV  LN+RI   ++++  +       WY GR
Sbjct: 489 PEAFNRWAARVLLAYSQFQLLCALRGGRWGVEELNQRIADILRKEGLL--KASIGWYPGR 546

Query: 481 PVMIARNDSALGLFNGDIGIALD----RGQGT-----RVWFAMPDG--NIKSVQPSRLPE 529
           PV++ RND +  L NGDIGI L+       GT     RV F   DG  +I+ V P RL  
Sbjct: 547 PVLVTRNDYSQRLMNGDIGITLEIPHRLADGTVVPTLRVAFLAGDGTQDIRWVMPGRLQA 606

Query: 530 HETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSL---YADERIL 586
            ET +AMTVHKSQGSEF H AL+LP   +P++TREL+YT +TRAR   SL        +L
Sbjct: 607 VETVFAMTVHKSQGSEFTHTALLLPENLSPILTRELIYTGITRARHWFSLGCVGGMNAVL 666

Query: 587 SAAIATRTERRSGL 600
             A+  R  R SGL
Sbjct: 667 PDAVKRRVLRASGL 680