Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 691 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas sp. BP01

 Score =  437 bits (1123), Expect = e-127
 Identities = 289/660 (43%), Positives = 382/660 (57%), Gaps = 70/660 (10%)

Query: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL--- 58
           QLL+  VE   LR LD   V F    A    P + LAAAL SH  G GHVCL L +    
Sbjct: 32  QLLDRWVERGWLRALDRAFVSFLEERAPGSDPLLLLAAALASHQLGHGHVCLDLQQTLAE 91

Query: 59  ---------ENNEASHPLL--ATCVSEIGELQNWEECLLASQAVSRGDEP----TPMILC 103
                    E +    PLL  +  ++ + +LQ W + + AS  V+ GD P     P++L 
Sbjct: 92  PDFALSLPPEGDALIGPLLLPSQLLANL-DLQAWHDRIAASPLVAAGDTPGQQARPLVLS 150

Query: 104 GDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFP---VSDEINWQKVAAAV 160
            +RLYL R W  ER +     +     E   A L+  L +LF     + +++WQK+A A+
Sbjct: 151 AERLYLRRYWSYERRIDHTLRQRLTQAEAPLADLSGRLAQLFEGGAPAGQVDWQKLACAL 210

Query: 161 ALTRRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGK 218
           A     S+I+GGPGTGKTTTV +LLA L   A   G   RIRLAAPTGKAAARLTES+G+
Sbjct: 211 ATRAGFSIITGGPGTGKTTTVVRLLALLQGPAVEQGRPLRIRLAAPTGKAAARLTESIGQ 270

Query: 219 ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPM 278
            + +L ++ E + +IP + ST+HRLLG++PGS+  RHHAGNPL LDVLVVDEASMIDL M
Sbjct: 271 QVERLQVSAEVRGQIPTEVSTVHRLLGSRPGSRHFRHHAGNPLPLDVLVVDEASMIDLEM 330

Query: 279 MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERARQLSRLTGTHV 337
           M+ L+DALP  AR++ LGD+DQLASVEAGAVLGD+C  A  G ++   +  L +++G  +
Sbjct: 331 MANLLDALPPRARLVLLGDKDQLASVEAGAVLGDLCRDAEEGYYSPATSAWLEQISGESL 390

Query: 338 PAGTGTEAAS-----LRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD 392
            A +G +A       L   L +L+ S RFG  SGIGQLA  +NR D  A + +      D
Sbjct: 391 -AASGLKAGDEQRNPLAQQLVMLRFSRRFGEGSGIGQLARLVNRQDSHAARNLLAAPPAD 449

Query: 393 IEKRLLQSGED--YIAMLEEAL-------AGYGRYLDLLQARAEPDL------------- 430
           +    L+  +D  +  +L + L        GY  YL  L  R  P L             
Sbjct: 450 VHSLALKHEQDRAFDRLLLDGLNRGAEGPQGYRSYLRTL-GRYRPPLDTAFDDPAWEQWA 508

Query: 431 --IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARND 488
             ++ +F ++QLLCA+R G +GV GLNER+ + +     I       WYEGRPV++ RND
Sbjct: 509 GRVLHSFEDFQLLCAVRRGAWGVEGLNERVARVLHNAGLI--DSQQPWYEGRPVLVTRND 566

Query: 489 SALGLFNGDIGIAL----DRGQG-TRVWFAMPDGN--IKSVQPSRLPEHETTWAMTVHKS 541
             LGL NGDIGIAL    + G+   RV F   DG+  ++ V PSRL E ET +AMTVHKS
Sbjct: 567 YGLGLMNGDIGIALRLPDEHGEPLLRVAFPRNDGSGGVRFVLPSRLNEVETVFAMTVHKS 626

Query: 542 QGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGL 600
           QGSEF H AL+LP    PV+T+ELVYT +TRA+   SL    + I   A+A +  R SGL
Sbjct: 627 QGSEFSHTALVLPDALNPVLTKELVYTGITRAKHCFSLVEPRQGIFEEAVARKVRRISGL 686