Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 721 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas aeruginosa PA14

 Score =  411 bits (1056), Expect = e-119
 Identities = 288/670 (42%), Positives = 365/670 (54%), Gaps = 74/670 (11%)

Query: 3   LQKQLLEAVEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL- 58
           L +QL   V    LR LD   V F + +     P V LAAAL SH  G GHVCL L    
Sbjct: 30  LLRQLDLWVARGWLRALDRAFVAFLVELQPQADPRVLLAAALTSHQLGHGHVCLDLEATL 89

Query: 59  -----------ENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDE----------- 96
                      E +E    LL + +     L  W E L AS  V   DE           
Sbjct: 90  GAPDAALSLPPEGDEGRDVLLPSQLLRGVRLDAWREALAASSLVEVVDERPGDPEPSETA 149

Query: 97  PTPMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDE--- 150
            +P++LC  RLYL R W +E  +A    E         A LA  L  LF   P  D    
Sbjct: 150 TSPLVLCAQRLYLRRYWRHELEIALALRERLGRQAPLAADLAPRLAALFAQAPTEDGQRV 209

Query: 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAAPTGKA 208
            +WQK+A A+A     S+I+GGPGTGKTTTV +LL  L    +A G+  RIRLAAPTGKA
Sbjct: 210 TDWQKLACALAARGYFSLITGGPGTGKTTTVVRLLGLLQAPAVAAGQPLRIRLAAPTGKA 269

Query: 209 AARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVV 268
           AARL+ES+G+ +R LPL ++  + IP + +TLHRLLG++P ++  RHH  NPL LDVLVV
Sbjct: 270 AARLSESIGQQVRALPLAEDVLQAIPAEVTTLHRLLGSRPDTRHFRHHRDNPLALDVLVV 329

Query: 269 DEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAG-FTAERAR 327
           DEASMIDL MM+ L+DALP  AR+I LGD+DQLASVEAGAVLGD+C  A  G ++AE   
Sbjct: 330 DEASMIDLEMMASLLDALPPQARLILLGDKDQLASVEAGAVLGDLCRDAEEGWYSAETRA 389

Query: 328 QLSRLTG-THVPAGTGT-EAASLRDSLCLLQKSYRFGSDSGIGQLAAAINR---GDKTAV 382
            L R++G T      G+ +A  L     +L+ S RFG+ SGIG+LA  +NR   GD  A+
Sbjct: 390 WLQRVSGETWQGLREGSAQAHPLAQQTVMLRHSRRFGASSGIGRLARLVNRQQAGDARAL 449

Query: 383 KTVFQQDFTDIE---------KRLLQSG-----------EDYIAMLEEALAGYGRYLDLL 422
                 D  D+           RL   G             Y+  L E     G  L+  
Sbjct: 450 LDSPPADLFDLRLRGERDAAFARLFVDGHPQAPGTPYGYRHYLQRLAEGRPAAGLALEDG 509

Query: 423 QARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPV 482
                   ++ AF+ ++LLCALR GP+GV GLN+R+   + +   I       WYEGRPV
Sbjct: 510 AWERWAQSVLTAFDAFRLLCALRRGPWGVEGLNQRVAAELLRLGLI--EADHGWYEGRPV 567

Query: 483 MIARNDSALGLFNGDIGIAL------DRGQ---GTRVWFAMPDGN--IKSVQPSRLPEHE 531
           ++ RND +LGL NGDIGIAL      D G      RV F   DG+  ++ V PSRL E +
Sbjct: 568 LVTRNDYSLGLMNGDIGIALRLPERNDDGSLRFALRVAFPRNDGSGGVRFVLPSRLVEVD 627

Query: 532 TTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYAD-ERILSAAI 590
           T +AMTVHKSQGSEF H AL+LP    PV+T+ELVYT +TRAR   SL      +   A+
Sbjct: 628 TVFAMTVHKSQGSEFAHTALVLPDALNPVLTKELVYTGITRARDWFSLVESLPGVFEEAV 687

Query: 591 ATRTERRSGL 600
             +  R SGL
Sbjct: 688 RRKVRRLSGL 697