Pairwise Alignments

Query, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

Subject, 701 a.a., exodeoxyribonuclease V, alpha subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  408 bits (1049), Expect = e-118
 Identities = 279/688 (40%), Positives = 379/688 (55%), Gaps = 101/688 (14%)

Query: 1   MKLQKQLLEAVEH----KQLRPLDVQFALTVA-----GDEHPAVTLAAALLSHDAGEGHV 51
           ++L+  L E +++    + + PLD  FAL +A       + P   L  ALLS      H 
Sbjct: 22  LRLKAPLAELLKYWEKERLITPLDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHT 81

Query: 52  CLPLSRLEN-----NEASHPLLATCVSE-IGELQNWEECLLASQAVSRGDEPTPMILCGD 105
           CL L  +          +H  +   + E I  LQN+E       AV       P+I  G 
Sbjct: 82  CLVLEHIVPANPMAESVNHCQIRLSLPELIARLQNFE-------AVGEPHSNKPLIFDGG 134

Query: 106 RLYLNRMWCNERTVARFFNEVNHAIEVD------EALLAQTLDKLFP----------VSD 149
           RLYL R    E  VA     ++ +   +      +A L + LD LFP          +  
Sbjct: 135 RLYLERYHHFETEVANALTRLSSSQPANSNDKDSDAPLRRQLDYLFPNAASSHAATTLEP 194

Query: 150 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAA 209
            I+WQKVA A AL ++++VI+GGPGTGKTTTV KLL  L+Q   G   +IRL APTGKAA
Sbjct: 195 HIDWQKVATATALGKKLAVITGGPGTGKTTTVTKLL--LLQQL-GSPKQIRLVAPTGKAA 251

Query: 210 ARLTES-------LGKALRQLPLTDEQK------------KRIPEDASTLHRLLGAQPGS 250
           ARL+ES       L + L+Q   T+EQ             K++PE+ASTLHRLLG  P S
Sbjct: 252 ARLSESIKASKARLEQELKQAQATNEQVQSHETQALLAALKQVPEEASTLHRLLGVIPNS 311

Query: 251 QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVL 310
            + RHH GNPL LD+L+VDEASM+DLPMM +L+ ALP+ A +I LGD+DQLASVEAGAVL
Sbjct: 312 AQFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLTALPEQAGLILLGDQDQLASVEAGAVL 371

Query: 311 GDICAYA----------NAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYR 360
            DICA               ++  +A QLS+LT   + A    E   + DSLC+L  S+R
Sbjct: 372 ADICAGLKYESDQHSEWRMRYSQAQAEQLSKLTSFDLRAYIHRE-PKIGDSLCMLTHSHR 430

Query: 361 FGSDSGIGQLAAAINRGDKTAVKTVFQQ---DFTDIEKRLLQS-----------GEDYIA 406
           F  D+GIG LA+A+NR D   + TV+Q+   + T +E  +  S                A
Sbjct: 431 FKGDAGIGLLASAVNRSDLAGILTVWQRGLAELTWLEHSMALSQTQAKISEPANNSGLHA 490

Query: 407 MLEEALAGYGRYLDLLQARAEPDLI------IQAFNEYQLLCALREGPFGVAGLNERIEQ 460
           +L +A   Y  YL  LQ  ++P  +      I  FN+Y++LCA+R G +GV G+N+ + +
Sbjct: 491 LLTQACEQYAEYLRPLQI-SDPSSVPSAIEAIARFNQYRILCAMRSGDYGVEGINQTVTK 549

Query: 461 FMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIAL---DRGQGTRVWFAMPDG 517
            + Q + I  HP   +Y GRP++I  ND  LGLFNGDIG+ L   DR +     F   DG
Sbjct: 550 ALSQAKLI--HPQQEFYLGRPIIIQSNDYNLGLFNGDIGLILQDEDRPERLMAHFIKADG 607

Query: 518 NIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPV----VTRELVYTAVTRA 573
            +  V P+RLP HET +AMTVHKSQGSEF+  AL+LP   + V    +T+ELVYTA+TRA
Sbjct: 608 KLLKVLPARLPSHETCYAMTVHKSQGSEFNRVALVLPPNPSLVQWQLLTKELVYTAITRA 667

Query: 574 RRRLSLYADERILSAAIATRTERRSGLA 601
           ++  S    +++   A    T+R SGLA
Sbjct: 668 KQHFSCLGTQQVFERASQQATQRASGLA 695