Pairwise Alignments

Query, 349 a.a., tRNA pseudouridine synthase D (NCBI) from Escherichia coli BW25113

Subject, 361 a.a., tRNA pseudouridine(13) synthase TruD from Vibrio cholerae E7946 ATCC 55056

 Score =  264 bits (674), Expect = 3e-75
 Identities = 158/334 (47%), Positives = 210/334 (62%), Gaps = 6/334 (1%)

Query: 7   LTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFL 66
           L YL GKP     LKA PE F V E LG+   G GEH++VRI K G NT FVA+ LAK  
Sbjct: 8   LAYLCGKPTAKAKLKALPEHFQVNEVLGYSLTGHGEHLMVRIRKTGENTSFVANELAKAC 67

Query: 67  KIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAF--QLEGCQVLEYARHKRKLRLG 124
            + +R VS+AG KD+HAVTEQWL   +P  E PD SAF  Q    ++LE  RH +KLR G
Sbjct: 68  GVPSRAVSWAGLKDRHAVTEQWLSVHLPNGETPDFSAFLAQYPSIEILEVTRHDKKLRPG 127

Query: 125 ALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTP 184
            L+GN F + L EVS+   V  RL  +   GVPNYFG+QRFG  G+NL  A+RW + N  
Sbjct: 128 DLQGNEFVVTLSEVSDVAAVLSRLETVAELGVPNYFGSQRFGRHGNNLSEARRWGRDNVR 187

Query: 185 VRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAEL 244
            R++N+RS +LSAARS +FNQIV++R+++    + ++GD + LA +  + V    +LA  
Sbjct: 188 SRNQNQRSLYLSAARSWIFNQIVSKRIEQGCFARFIEGD-IALAEQQMFNV--DGDLALW 244

Query: 245 QRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLY 304
            +R+   E+ I+AAL G     T  +AL  EQA + AE +L AL+   ++   RRA+ L 
Sbjct: 245 DQRLQAGEVAISAALAGDNALPTSGQALPLEQAELDAEPDLMALIRGNRMRHDRRAIALK 304

Query: 305 PQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELI 338
            Q LSW   +D  + +RF L AGSFATS+VRELI
Sbjct: 305 AQNLSWQVQED-QITLRFSLDAGSFATSLVRELI 337