Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  212 bits (539), Expect = 2e-59
 Identities = 104/237 (43%), Positives = 163/237 (68%), Gaps = 3/237 (1%)

Query: 81  RRALRGDVASRR---RMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPE 137
           RR   G+  +RR    M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  
Sbjct: 370 RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR 429

Query: 138 RGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEE 197
           RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N   R +R++  ++  EPS EE
Sbjct: 430 RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEE 489

Query: 198 IAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQ 257
           +AE++  P D + ++L++ +   S++TP+G D +  L D + D     P D+   + +KQ
Sbjct: 490 LAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKQ 549

Query: 258 SIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  + L  L A++ +VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+LR
Sbjct: 550 ATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 606



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 9/78 (11%)

Query: 18  DENGVEVFDE-----KALVEQEPSDNDLAEEELLSQGATQ----RVLDATQLYLGEIGYS 68
           ++ G+ V++E     + ++ ++ +D D AEE   +    +    R  D  ++Y+ E+G  
Sbjct: 52  NDMGIRVYEEAPDADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTV 111

Query: 69  PLLTAEEEVYFARRALRG 86
            LLT E E+  A+R   G
Sbjct: 112 ELLTREGEIVIAKRIEEG 129