Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 698 a.a., RNA polymerase sigma factor RpoD from Rhodopseudomonas palustris CGA009

 Score =  209 bits (533), Expect = 1e-58
 Identities = 97/238 (40%), Positives = 166/238 (69%)

Query: 77  VYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDP 136
           V+  ++  R    +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+ 
Sbjct: 447 VHSVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY 506

Query: 137 ERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAE 196
            RG++FSTYATWWIRQ I R+I +Q RTIR+P+H+++ +N  +RT+R++ +++  EP+ E
Sbjct: 507 RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPE 566

Query: 197 EIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMK 256
           E+AE+L  P++ V ++L++ +   S++TP+G + +  L D + D+    P D     +++
Sbjct: 567 ELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLR 626

Query: 257 QSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           ++  + L  L  ++  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 627 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 684



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 23  EVFDEKALVE-QEPSDNDLAE------EELLSQGATQRVLDATQLYLGEIGYSPLLTAEE 75
           E  +E+A  E  E  DNDL E       E       +R  D  ++YL E+G   LL+ E 
Sbjct: 94  EAEEEEAKEEADEELDNDLVEVTAKAVTETKKSEPGERTDDPVRMYLREMGTVELLSREG 153

Query: 76  EVYFARRALRGDVASRRRMIESNLRL-VVKIARRYGNRG-LALLDLIE 121
           E+  A+R   G  A    + ES L    + I R   N G + L D+I+
Sbjct: 154 EIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIID 201