Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score =  214 bits (545), Expect = 5e-60
 Identities = 96/225 (42%), Positives = 162/225 (72%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 424 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 483

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 484 IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV 543

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            +++++ +   S++TP+G + +  L D + D+    P D+   +++K++  + L  L  +
Sbjct: 544 RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPR 603

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 604 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 648



 Score = 31.6 bits (70), Expect = 6e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 9/77 (11%)

Query: 19  ENGVEVF-DEKALVEQEPSDNDL----AEEELLSQGATQRVLDAT----QLYLGEIGYSP 69
           E G+ +  DE+A  E++    +L    +  E+   GA    LD T    ++YL E+G   
Sbjct: 68  EMGINIIEDEEAEEEEQKGSTELVTTESNREVAVAGAAAEKLDRTDDPVRMYLREMGSVE 127

Query: 70  LLTAEEEVYFARRALRG 86
           LL+ E E+  A+R   G
Sbjct: 128 LLSREGEIAIAKRIEAG 144