Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  224 bits (572), Expect = 3e-63
 Identities = 107/249 (42%), Positives = 174/249 (69%)

Query: 74  EEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEK 133
           EE ++  +R     + +++ +I SNLRLVV IA++Y NRGL  LDLI+EGN+GL++AV+K
Sbjct: 336 EEVLWRIKRGNTHAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDK 395

Query: 134 FDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEP 193
           F+ +RG++FSTYATWWIRQ I RAI +Q RTIR+P+H+++ +N  +RT+R L  +L  +P
Sbjct: 396 FEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDP 455

Query: 194 SAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDD 253
           + EEIAE++D P+D V ++L++ +   S++TP+G + + +L D + D+K   P +   + 
Sbjct: 456 TPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNT 515

Query: 254 DMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRL 313
            + + I   L +L  ++ +VL +RFG+      TLE+VG+   +TRER+RQI+ + LR+L
Sbjct: 516 KLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKL 575

Query: 314 REILQTQGL 322
           R  +++Q L
Sbjct: 576 RHPVRSQML 584



 Score = 33.5 bits (75), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 18  DENGVEVFDEKALVEQEPSDN---DLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAE 74
           +++G ++       E+EPS     DL E+E  S   + R  D  ++YL E+G  PLL  +
Sbjct: 60  EKDGKKISVSPGESEEEPSGEPGLDLVEDEE-SADYSSRSTDPVRMYLREMGAVPLLDRD 118

Query: 75  EEVYFARRALRGD 87
            EV  A++   G+
Sbjct: 119 GEVQIAKKIELGE 131