Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  214 bits (545), Expect = 5e-60
 Identities = 96/225 (42%), Positives = 162/225 (72%)

Query: 90  SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
           +++ M+E+NLRLV+ IA++Y NRGL  LDLI+EGN+GL++AV+KF+  RG++FSTYATWW
Sbjct: 426 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 485

Query: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
           IRQ I R+I +Q RTIR+P+H+++ +N  +RT R++ H++  EP+ EE+AE+L  P++ V
Sbjct: 486 IRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKV 545

Query: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
            +++++ +   S++TP+G + +  L D + D+    P D+   +++K++  + L  L  +
Sbjct: 546 RKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPR 605

Query: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLR 314
           +  VL  RFG+      TLE+VG++  +TRER+RQI+ + LR+L+
Sbjct: 606 EERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK 650



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 18  DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQ---RVLDATQLYLGEIGYSPLLTAE 74
           +E+  E  D  A    +  ++  + E  +S  +++   R  D  ++YL E+G   LL+ E
Sbjct: 75  EEDEAEDGDAPANASTQVVESSSSREVAVSTSSSETLDRTDDPVRMYLREMGSVELLSRE 134

Query: 75  EEVYFARRALRG 86
            E+  A+R   G
Sbjct: 135 GEIAIAKRIEAG 146