Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 378 a.a., RNA polymerase sigma factor RpoS from Ralstonia sp. UNC404CL21Col

 Score =  271 bits (693), Expect = 2e-77
 Identities = 156/321 (48%), Positives = 201/321 (62%), Gaps = 9/321 (2%)

Query: 10  DLNEDAEF-DENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYS 68
           DLN+ ++  DE   E  D +   E  P      EE+       +   D  Q YL  I   
Sbjct: 63  DLNDTSDSADEPDEEEEDGEEAEEPAP------EEDFRKVLQAELAADTVQHYLNRISIK 116

Query: 69  PLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLI 128
           PLLT  EE++F+  A  G+ A+R+ MIE NLRLVV IA+ Y NRG+ LLDLIEEGNLGL+
Sbjct: 117 PLLTPAEELHFSTLAKAGEFAARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLM 176

Query: 129 RAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTAREL--S 186
            A+EKFDPERGFRFSTYATWWIRQ+IERAIMNQ RT+RLP+H+++ELN  LR  R L  S
Sbjct: 177 HAIEKFDPERGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKS 236

Query: 187 HKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGP 246
                + S E+IA  L K  ++V  +L LNE  TS+DTP   D   +LLD L+DE    P
Sbjct: 237 GVDGRDASLEDIAHLLGKTTEEVQDVLSLNEHTTSLDTPFDLDPGTSLLDFLSDEHGASP 296

Query: 247 EDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQ 306
           +      ++   +  WL  L+ K R V+ RRFGL   E ATLE++  E+GLTRERVRQIQ
Sbjct: 297 DQEVAHRELSLLMKSWLARLSDKHRYVVERRFGLNYIEPATLEELAAEMGLTRERVRQIQ 356

Query: 307 VEGLRRLREILQTQGLNIEAL 327
            E L +L+    +QG+  +A+
Sbjct: 357 QEALVKLKRHFASQGVRKDAV 377