Pairwise Alignments

Query, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

Subject, 326 a.a., RNA polymerase, sigma 38 subunit, RpoS (RefSeq) from Shewanella sp. ANA-3

 Score =  444 bits (1141), Expect = e-129
 Identities = 230/302 (76%), Positives = 260/302 (86%), Gaps = 3/302 (0%)

Query: 31  VEQEPSDNDLAEE---ELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGD 87
           +++E    DL +E   E   Q   Q+ LDATQLYLGEIG+SPLL+AEEEVYF+R+AL+G 
Sbjct: 24  LDKEDIAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSPLLSAEEEVYFSRKALKGC 83

Query: 88  VASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 147
             SR RMIESNLRLVVKIARRY NRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT
Sbjct: 84  EKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 143

Query: 148 WWIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVD 207
           WWIRQTIERAIMNQTRTIRLPIH+VKELNVYLRTAREL+ KLDHEP+AEEIAE+L     
Sbjct: 144 WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSV 203

Query: 208 DVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELN 267
           DVSRML+LNE+ITSVD PLGGD++KALLD+LAD+   GP+   QD+D+  S+VKWL ELN
Sbjct: 204 DVSRMLKLNEKITSVDIPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELN 263

Query: 268 AKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEAL 327
            KQREVLARRFGLLGYE +TLEDVG EIGLTRERVRQIQVE L+RLR++L  QGL++EAL
Sbjct: 264 TKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDLLGAQGLSVEAL 323

Query: 328 FR 329
           FR
Sbjct: 324 FR 325