Pairwise Alignments

Query, 255 a.a., predicted DNA-binding transcriptional regulator (RefSeq) from Escherichia coli BW25113

Subject, 257 a.a., glucitol operon DNA-binding transcriptional repressor SrlR from Escherichia coli Nissle 1917

 Score =  112 bits (279), Expect = 1e-29
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 4/253 (1%)

Query: 1   MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLEQQGAVVLVSGGVQSPG 60
           M P +R+  ILE + ++G  S+ EL    + +  TIR+DL  LE  G V+   GGV    
Sbjct: 1   MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRTYGGVVL-N 59

Query: 61  RVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGTTTLAIAQHLIHMESLTVV 120
           +   +P    KT +   +K  I + A   +  G  I LDAG+T L +   L    ++TV+
Sbjct: 60  KEESDPPIDHKTLINTHKKELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVM 119

Query: 121 TNDFVIADYL--LDNSNCTIIHTGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSV 178
           TN   I + L  LDN   TI+  GG   +++ S  G+ A         D+ F+      +
Sbjct: 120 TNSLHIVNALSELDNEQ-TILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDL 178

Query: 179 RGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESA 238
               T   +  TV +A+ +A+R+ +L+ D++K+G+ +  +   L   D++ITD G+  + 
Sbjct: 179 NAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAF 238

Query: 239 SRALVKQDLSLLV 251
            +AL ++ + +++
Sbjct: 239 RQALEEKGIDVII 251