Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 474 a.a., sigma-54 dependent transcriptional regulator/sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  306 bits (783), Expect = 2e-87
 Identities = 164/342 (47%), Positives = 230/342 (67%), Gaps = 7/342 (2%)

Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408
           A +++  L E+L  EN  L  +L +      +I G S+ + ++ KQ+ +VA +DSTVLI 
Sbjct: 138 ALEQVQALSEQLASENSLLQAELEDKRGP-SQITGSSDCIQNLQKQIRLVANTDSTVLIQ 196

Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468
           GE GTGKEL+AR +H LS R ++ M+ +NCAA  A LLES+LFGHE+GAFTGAS +R GR
Sbjct: 197 GENGTGKELVARELHQLSSRRDKPMISVNCAAFSASLLESELFGHEKGAFTGASNRRKGR 256

Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528
           FELA K +LFLDEV ++ LE Q KLLRV+QEQEFER+G ++ I+ D+RLIAAT+ DL+K 
Sbjct: 257 FELAHKGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGGSERIKVDIRLIAATHHDLQKR 316

Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588
           V    FR DL+YRLNVFP+ +PPLR+R  DIP L +     ++++LG+ +  + A +L+ 
Sbjct: 317 VEQGLFRMDLFYRLNVFPLKVPPLRQRAGDIPELVQQLLRSLSQKLGKPLAGVDAVSLKR 376

Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIVLPEPETPPAATVVALEGEDEYQL 648
           L    WPGNVREL+N++ER  +LT   VL++S     +P  + PP       E E  +  
Sbjct: 377 LQQYSWPGNVRELQNLLEREAILTHQPVLKMS----SIPGSQMPPVTGQTLAEVEASH-- 430

Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690
           I+  L+  +  ++GP G A  LGL  +TL SRM++LGI +SA
Sbjct: 431 ILLTLENCDWRISGPGGVAAVLGLPPSTLRSRMQKLGIRRSA 472