Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 477 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  262 bits (670), Expect = 2e-74
 Identities = 145/350 (41%), Positives = 210/350 (60%), Gaps = 43/350 (12%)

Query: 378 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 437
           F  ++GRSE +  V   +  VA SD+TVL+LG++GTGKE++AR IH +S R +   + +N
Sbjct: 131 FRSLVGRSEGIAQVRHLINQVAGSDATVLVLGQSGTGKEVVARNIHYISDRRDGPFIPVN 190

Query: 438 CAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVL 497
           C A+P  LLES+LFGHE+G+FTGA + R GRFELA+  +LFLDE+GDMPL++Q KLLRVL
Sbjct: 191 CGAIPPELLESELFGHEKGSFTGAISARKGRFELAEGGTLFLDEIGDMPLQMQVKLLRVL 250

Query: 498 QEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPE 557
           QE+ FER+G +K I T+VR+IAAT+R+L+ M+A+ EFR DL+YRLNVFP+ +P L ER +
Sbjct: 251 QERVFERVGGSKPIHTNVRVIAATHRELETMIANGEFREDLFYRLNVFPVEMPALCERKD 310

Query: 558 DIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVL 617
           DIPLL +    ++    GR         + +L    W GNVREL N++ER  +L  G ++
Sbjct: 311 DIPLLLQELVSRVYNE-GRGKVRFTQRAIESLKEHSWSGNVRELSNLVERLTILYPGGLV 369

Query: 618 QLS---------------------------------------LPDIVLPEPETPPAATVV 638
            ++                                       +P+   P    P    + 
Sbjct: 370 DVNDLPLKYRHIDVPEYQVQVSEEELERDALASIFSDEVAVDIPESRFPSELPPEGVNLK 429

Query: 639 ALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688
            L  E E  +I + L + + VVA    AA+ LG++RTTL+ +M++ G+ K
Sbjct: 430 DLLAELEIDMIRQALDQQDNVVA---RAAEMLGIRRTTLVEKMRKYGMSK 476