Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 601 a.a., sigma54 specific transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  286 bits (731), Expect = 3e-81
 Identities = 183/440 (41%), Positives = 242/440 (55%), Gaps = 51/440 (11%)

Query: 297 IQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQ-----IAERVAIAVDNALAYQ 351
           I      PL     M+GV+ +           +L LL +      A+ ++ AV NA +++
Sbjct: 160 IHAYAAYPLQFKGNMIGVMAVFYDRPMRGVLADLMLLHRKMHKIFADSLSAAVVNARSFE 219

Query: 352 EIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGET 411
           EI  L+  L  EN  L  ++    +    I+G S  +   L+QV+MVA +D+TVL+LGE+
Sbjct: 220 EIQHLRRALELENEHLRGEVRRARAPHS-IVGDSPPLRRALEQVDMVAPTDATVLLLGES 278

Query: 412 GTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL 471
           GTGKEL+A+AIH+ S R    +V++NC+A+P  L ES+ FGH +GAFTGA   R+GRF+L
Sbjct: 279 GTGKELVAQAIHDRSQRAAAPLVRVNCSAIPRELFESEFFGHVKGAFTGALRDRVGRFQL 338

Query: 472 ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVAD 531
           AD  +LFLDEVG++PLELQ KLLRVLQE  FER+G  +    DVR+IAATNRDL+  V  
Sbjct: 339 ADGGTLFLDEVGEIPLELQGKLLRVLQEGVFERVGEERSRSVDVRIIAATNRDLRADVEH 398

Query: 532 REFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSN 591
             FR DL++RL+VFP+ LPPLR R +DIPLLA+ F     RRL      I    +  L +
Sbjct: 399 GRFRQDLFFRLSVFPVALPPLRARRDDIPLLARHFVRASCRRLNLPEPRIAHRQMAELQS 458

Query: 592 MEWPGNVRELENVIERAVLLTRGNVLQLSLP-----DIVLP------------------- 627
             WPGNVREL+NVIER V++  G  L L LP       V P                   
Sbjct: 459 YPWPGNVRELQNVIERGVIMAEGGRLVLDLPPEGGMQAVSPGAAFGMPGGASPVEGGGAH 518

Query: 628 -------------------EPETPPAATVVALEGEDEYQL--IVRVLKETNGVVAGPKGA 666
                              +   P  A +++     E Q   I R L    G V GP GA
Sbjct: 519 DAPWGTGETGSAGKTADFGQTGAPDPAGIISEAHWRELQRANIERALTAAGGRVHGPGGA 578

Query: 667 AQRLGLKRTTLLSRMKRLGI 686
           A+ LGL  TTL SRMK LG+
Sbjct: 579 AELLGLPPTTLQSRMKTLGL 598