Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 477 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  262 bits (670), Expect = 2e-74
 Identities = 169/438 (38%), Positives = 241/438 (55%), Gaps = 39/438 (8%)

Query: 274 INLHERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLL 333
           + +   D +A    +L   W      L +    S DT +  L+     + +    + ++L
Sbjct: 55  VRMARMDGIAALRHIL--DWNPATPVLIMTAFSSVDTAVEALRTG-AYDYLIKPLDFDVL 111

Query: 334 RQIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLK 393
           R   ER   A+D+     E   L+ERL  +  A     ++       IIGRS  M+ +++
Sbjct: 112 RHTLER---ALDHTRLASENRELRERLSSQGGAGAPGASH------GIIGRSAPMHELVE 162

Query: 394 QVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGH 453
            +  VA S++TVLI GE+GTGKEL+ARA+H  S R+ + +V +NCAA+   LLES+LFGH
Sbjct: 163 MIATVAPSEATVLITGESGTGKELVARALHAASHRSAKPLVTVNCAALTETLLESELFGH 222

Query: 454 ERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQT 513
           ERGAFTGA  +R GRF  AD  +LFLDE+G+MPL LQ KLLR LQ+ E +R+GS+  +  
Sbjct: 223 ERGAFTGADRRREGRFVQADGGTLFLDEIGEMPLTLQAKLLRALQQGEVQRVGSDTPLTV 282

Query: 514 DVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARR 573
           DVR+IAATNRDL++  A   FR DLYYRLNV  +H+P LRER  D+PLLA  F  +   +
Sbjct: 283 DVRVIAATNRDLREEAAAGRFREDLYYRLNVIAVHVPALRERAGDVPLLAAFFLDRYTEK 342

Query: 574 LGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSLP---------- 622
             +++     + +  L   +WPGNVRELEN IERAV+L  G+ V +  LP          
Sbjct: 343 NRKHLKGFTPQAMDMLLRHDWPGNVRELENAIERAVILATGDYVTERELPLHFGGGGSGI 402

Query: 623 ------------DIVLPEPETPPAATVVALEGED-EYQLIVRVLKETNGVVAGPKGAAQR 669
                              +    A    L  ED E + I+  L+ET         AA+R
Sbjct: 403 AGSGGSAGTGEAGAGNAPADGDGLAPYAGLSLEDLERRAIIATLRET---ADNKSEAARR 459

Query: 670 LGLKRTTLLSRMKRLGID 687
           LG+ R TL +++K+  ++
Sbjct: 460 LGITRATLHNKLKKYDLE 477