Pairwise Alignments

Query, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

Subject, 456 a.a., two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  263 bits (673), Expect = 1e-74
 Identities = 156/352 (44%), Positives = 217/352 (61%), Gaps = 16/352 (4%)

Query: 348 LAYQEIHRLKER------LVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQS 401
           L ++E+    ER      L DEN AL   L +     G IIG+S++M+ ++  +  +A S
Sbjct: 109 LDFEELRLTLERALDHAALRDENAALKTTLASSFDPAG-IIGQSQSMHRLMDMMASIAPS 167

Query: 402 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGA 461
           ++TVL+ GE+GTGKELIARAIH  S R +   V +NCAA+   LLES+LFGHE+GAFTGA
Sbjct: 168 EATVLVTGESGTGKELIARAIHANSQRRHGPYVTVNCAALTETLLESELFGHEKGAFTGA 227

Query: 462 SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 521
             +R GRF+ ADK ++FLDE+G+  L +Q KLLR +QE+E +R+GS++ ++ DVR+IAAT
Sbjct: 228 EKRREGRFQSADKGTIFLDEIGETSLPMQAKLLRAIQEREIQRVGSDQTLRVDVRIIAAT 287

Query: 522 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSI 581
           NRDL+  V    FR DLYYRLNV  +H+PPLRER EDIPLLA  F  +   + G+ +   
Sbjct: 288 NRDLRAEVEAGRFRQDLYYRLNVVTLHVPPLRERVEDIPLLAGHFLRRFTEKNGKRVKGF 347

Query: 582 PAETLRTLSNMEWPGNVRELENVIERAVLLTRGN-VLQLSLPDIVL----PEPETPPAAT 636
             + +  L   +WPGNVRELEN  ERAV+L  G  + +  LP  +           P   
Sbjct: 348 TPQAMDRLLKHDWPGNVRELENAAERAVVLLVGEYISERELPHAIAGGDGDATCAVPRFN 407

Query: 637 VVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDK 688
            + LE E E   I+  +  + G       AA+RLG+ R TL +++ R   D+
Sbjct: 408 GMTLE-EIERAAILDAMDASEG---NKSEAARRLGITRKTLHAKLNRYADDE 455