Pairwise Alignments

Query, 504 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

Subject, 584 a.a., nif-specific transcriptional activator NifA from Rhodopseudomonas palustris CGA009

 Score =  251 bits (640), Expect = 6e-71
 Identities = 141/319 (44%), Positives = 199/319 (62%), Gaps = 15/319 (4%)

Query: 114 VGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALA------------AGALSNAL 161
           +G+P+     ++G L++D ++  +     D ++R +  +A                   L
Sbjct: 142 IGVPIRIDSRVVGTLSIDRVRDGRSHFRMDADVRFLTMVANLIGQTVKLHRVVARDRERL 201

Query: 162 LIEQLESQNMLPGDATPFEA--VKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGT 219
           + E    Q  L       E   VK   ++G SP + +L  ++ I+A S   VL+ GE+GT
Sbjct: 202 MAESHRLQKELSELKPERERKRVKVDGIVGESPAIRKLLAKVSIIAKSQSPVLLRGESGT 261

Query: 220 GKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMAD 279
           GKEL+AKAIHE S RA  P + +NCAALPESV ESELFGH KGAFTGAI++R G+FE+AD
Sbjct: 262 GKELIAKAIHELSARANGPFIKINCAALPESVLESELFGHEKGAFTGAIASRKGRFELAD 321

Query: 280 NGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGR 339
            GTLFLDEIGE+S + QAKLLRVLQ  + +RVG ++ ++V+VR++AATNR+L E V    
Sbjct: 322 KGTLFLDEIGEISASFQAKLLRVLQEQEFERVGGNQTIKVNVRIVAATNRNLEEAVARKE 381

Query: 340 FRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYS 399
           FRADL++R++V P+ +PPLR+R  D+ LLA  F +      G   +   + A +LL+  S
Sbjct: 382 FRADLYYRINVVPMILPPLRDRPSDIPLLASEFLKNFNKENG-RELAFESHALDLLKACS 440

Query: 400 FPGNVRELEHAIHRAVVLA 418
           FPGNVRELE+ + R   LA
Sbjct: 441 FPGNVRELENCVRRTATLA 459