Pairwise Alignments

Query, 504 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

Subject, 543 a.a., sigma-54-dependent Fis family transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  248 bits (634), Expect = 3e-70
 Identities = 157/376 (41%), Positives = 225/376 (59%), Gaps = 16/376 (4%)

Query: 116 LPLFAGQNLIGALTLDGMQPDQFDVFSDEE-LRLIAALAAGALSNALLIE----QLESQN 170
           +P+  G+ ++G ++ +    ++  +  D E L  IA++ A A+   LL      +LE++N
Sbjct: 144 VPIIHGRKVLGTISAERGYRNRRLLKQDVEVLSTIASMIAPAVELYLLENVDKVRLENEN 203

Query: 171 MLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHE 230
                    E  K + +IG S  M  +   I+ VA +   VLI GE+G GKELVA A+H 
Sbjct: 204 RRLQSELK-ERFKPSNIIGNSKPMQAVYDLIQKVATTKTTVLILGESGVGKELVANAMHY 262

Query: 231 ASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGE 290
            S  A  P V  NCAALPE++ ESELFGH KG+FTGA+  R G+FE+AD GT+FLDE+GE
Sbjct: 263 NSGNADGPFVKFNCAALPENIVESELFGHEKGSFTGAVGMRKGRFELADGGTIFLDEVGE 322

Query: 291 LSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV 350
           LSL +QAKLLRV+Q    +RVG ++ ++VD+R++AATNR+L + V  G FR DL++RL+V
Sbjct: 323 LSLPMQAKLLRVIQERTFERVGGNKPVKVDLRIIAATNRNLLDMVAKGTFREDLYYRLNV 382

Query: 351 FPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHA 410
           FP+++PPLR+RG DV+LLA +F  +     G     +S  A N+L  Y +PGNVRELE+ 
Sbjct: 383 FPITIPPLRDRGSDVVLLADHFVARSAAAAGKDVKRISTPALNMLMAYHWPGNVRELENV 442

Query: 411 IHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQNLREATEAFQRETIRQ 470
           I R+V+L     S D VI    H      +L T E         ++    EA + E I +
Sbjct: 443 IERSVIL-----SDDGVI----HGYNLPPSLQTSEETGTN-FGCSMEAKVEAVEYEMIVE 492

Query: 471 ALAQNHHNWAACARML 486
           AL  ++ N    A+ L
Sbjct: 493 ALKTHNGNTTEAAKEL 508