Pairwise Alignments

Query, 504 a.a., putative 2-component transcriptional regulator (VIMSS) from Escherichia coli BW25113

Subject, 526 a.a., transcriptional regulator from Herbaspirillum seropedicae SmR1

 Score =  457 bits (1175), Expect = e-133
 Identities = 260/523 (49%), Positives = 336/523 (64%), Gaps = 27/523 (5%)

Query: 5   VDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVL 64
           +D L  +  +L R I  ++R++RL+ TLR +  CDA+ALLR +    +PLAIDGL+ D L
Sbjct: 7   LDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDGLSSDTL 66

Query: 65  GRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLIPGQES-----LKVHACVGLPLF 119
           GRRF +  HPR   +       RF ADS LPDPYDGL+ G        L+VH C+G  L 
Sbjct: 67  GRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDCMGCALT 126

Query: 120 AGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQL-----ESQNMLPG 174
                 G +TLD +   +FD    + L+  AALAA  ++ A  I  L     ++Q     
Sbjct: 127 VNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQAQQRAEA 186

Query: 175 DATPFEAVK-QTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASP 233
                E  + Q ++IG SP   QL +EI + A SD+ VL++GETGTGKELVA A+H ASP
Sbjct: 187 YRLGLEQSQGQRELIGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHALHAASP 246

Query: 234 RAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSL 293
           RA  P++ LNCAALP+++ ESELFGHV+GAF+GA+++R GKFEMAD GTLFLDE+GEL L
Sbjct: 247 RAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPL 306

Query: 294 ALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPL 353
           A+QAKLLRVLQ G +QRVG DR  RVDVR++AATNRDL +EV  G FRAD +HRLSVFP+
Sbjct: 307 AVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHRLSVFPI 366

Query: 354 SVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHR 413
            VPPLRERG DV+LLAGYF EQ R R GLS + LSA A+  L  Y++PGN+RELEH I R
Sbjct: 367 RVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRELEHLIGR 426

Query: 414 AVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVPVVKQ-------------NLREAT 460
           + + + AT      IL     A   + LP P +A V   +              +LR+A 
Sbjct: 427 SALRSLATHRTRPTILTLDAAA---LELPAPSLATVAAAEPSLPAESTPAQASGSLRDAL 483

Query: 461 EAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLK 503
           E ++R+ +  AL ++  N AA AR L  D ANL+RLAKRLGL+
Sbjct: 484 ERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526