Pairwise Alignments

Query, 390 a.a., multidrug efflux system (NCBI) from Escherichia coli BW25113

Subject, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

 Score =  255 bits (652), Expect = 1e-72
 Identities = 147/375 (39%), Positives = 215/375 (57%), Gaps = 29/375 (7%)

Query: 1   MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFLVLRHFEETDDAYVAGN 60
           M++N  + T    V+ +  RK+  L L    ++   +  +YW  +   +  TD+AY A  
Sbjct: 12  MNSN-NSNTEFDGVRAAQSRKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAE 70

Query: 61  QIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFEKAKTALASSVRQTHQLMI 120
             ++   V G + +V   +T++VK+GDVLV LD TDAR A  +A+  LA + R+    + 
Sbjct: 71  IAEVTPAVGGIIAQVNVVDTEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLA 130

Query: 121 NSKQLQANIEVQ-------KIALAKAQSDY-------NRRVPLGNANLIGREELQHARDA 166
           N + L A +E Q       K  L  AQ+D+       +RR  L  +  +  EEL +A+  
Sbjct: 131 NDEGLSAMVEAQEANEQRVKAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTG 190

Query: 167 VTSAQAQLDVA--------------IQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLA 212
              AQA L+ A              I    AN A+   T ++  P V  A      A + 
Sbjct: 191 FAQAQANLNAAKAAMAQAQATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKID 250

Query: 213 LERTRIISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPV 272
           LERT I +P++G V++R VQ G ++    PLM VVP  +++VDANFKE ++ ++++GQPV
Sbjct: 251 LERTVIRAPISGIVAKRQVQVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPV 310

Query: 273 TITTDIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQ 332
           T+T D+YGDDV Y G V G   GTGSAFS++PAQNATGNWIKVVQRLP+RIELD K L+ 
Sbjct: 311 TLTADLYGDDVTYHGVVAGFSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQA 370

Query: 333 YPLRIGLSTLVSVNT 347
           YPL++GLS + +++T
Sbjct: 371 YPLQVGLSMVATIDT 385