Pairwise Alignments

Query, 220 a.a., putative transcriptional regulator (VIMSS) from Escherichia coli BW25113

Subject, 223 a.a., transcriptional regulator, GntR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 71.2 bits (173), Expect = 1e-17
 Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 7/207 (3%)

Query: 12  LKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQKGYRVASMSE 71
           L+  I+ G     E LR + L     +   P+REAL QL AE LV     KG     +S 
Sbjct: 20  LREKILSGEIAAGEPLRQTALAEALHVSRIPVREALLQLEAEGLVKFEPHKGATATELSV 79

Query: 72  QELLDIFDARANMEAMLVSLAIARGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRH 131
            ++ ++F+ RA +E  L++ AI +   E   D++    +L +LE+    E  +  W   +
Sbjct: 80  AQVTELFELRAMIETDLLAKAIPQLQAE---DLIKAERVLEQLESAFKHEDAVASWSELN 136

Query: 132 QAFHTAIVAGCGSHYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVL 191
             FHT +       + L++   L     RY    +R  +L    +     +H+ L     
Sbjct: 137 TQFHTCLYQAANRPHTLEVVHGLNTNCDRY----IRLQLLLAGGIPAAEHEHRELLNYCK 192

Query: 192 ARDTARASELMRQHLLTPIPIIQQAMA 218
            R+T +A+ L+R H+L     I+  +A
Sbjct: 193 QRETEKATALLRHHILHAATTIRDLVA 219