Pairwise Alignments

Query, 453 a.a., Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) (NCBI) from Escherichia coli BW25113

Subject, 461 a.a., signal recognition particle protein from Vibrio cholerae E7946 ATCC 55056

 Score =  685 bits (1768), Expect = 0.0
 Identities = 346/452 (76%), Positives = 397/452 (87%)

Query: 1   MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAV 60
           MF+NLTDRLS+TL+NISG+GRLTEDN+KDTLREVRMALLEADVALPVVR+F+NRVKE AV
Sbjct: 1   MFENLTDRLSKTLKNISGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFVNRVKEGAV 60

Query: 61  GHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKL 120
           G EV+KSLTPGQEF+KIVR +L A MGE N+ LNLAAQPPAV+LMAGLQGAGKTTSVGKL
Sbjct: 61  GVEVSKSLTPGQEFIKIVRQQLEAVMGESNEALNLAAQPPAVILMAGLQGAGKTTSVGKL 120

Query: 121 GKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAK 180
            K L+E+ KKKVLVVSADVYRPAAIKQLETLA  +GVDFFPS   QKP+DI NAA+  AK
Sbjct: 121 SKLLKERDKKKVLVVSADVYRPAAIKQLETLANDLGVDFFPSTPDQKPIDIANAAIDHAK 180

Query: 181 LKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEAL 240
            KFYDVL+VDTAGRL +DE MM EI+ +H +INPVETLFVVDAMTGQDAA+TAKAF +AL
Sbjct: 181 KKFYDVLIVDTAGRLAIDEQMMAEIQALHKAINPVETLFVVDAMTGQDAADTAKAFGDAL 240

Query: 241 PLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDV 300
           PLTGV+LTKVDGDARGGAALS+RHITGKPIKF+GVGEKT+ALEPFHPDRIASRILGMGDV
Sbjct: 241 PLTGVILTKVDGDARGGAALSVRHITGKPIKFIGVGEKTDALEPFHPDRIASRILGMGDV 300

Query: 301 LSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI 360
           LSLIED++  VD+ +AEKLA K K+  GFDL DF EQL QMKNMGGM  ++ KLPGM Q+
Sbjct: 301 LSLIEDLQRNVDQEKAEKLAKKFKEKKGFDLEDFREQLGQMKNMGGMMGMLDKLPGMSQL 360

Query: 361 PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEIIKGSRKRRIAAGCGMQVQDVNRLLKQF 420
           P ++K ++DD+V  +MEAIINSMTMKER  P++IKGSRK+RIAAG G QVQDVNRLLKQF
Sbjct: 361 PADMKDKVDDRVFKQMEAIINSMTMKERQNPDLIKGSRKKRIAAGSGTQVQDVNRLLKQF 420

Query: 421 DDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPG 452
             MQ+MMKKM++GGM  MMR+M+G+M  G  G
Sbjct: 421 TQMQKMMKKMQQGGMKGMMRNMQGLMGGGGRG 452