Pairwise Alignments

Query, 518 a.a., predicted periplasmic binding protein/transglycosylase (RefSeq) from Escherichia coli BW25113

Subject, 530 a.a., lytic transglycosylase F from Vibrio cholerae E7946 ATCC 55056

 Score =  454 bits (1169), Expect = e-132
 Identities = 230/468 (49%), Positives = 320/468 (68%), Gaps = 16/468 (3%)

Query: 3   KLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGK 62
           KL I  L++G+L+LLL      S P      + +  I+ RG LRV T++ PL+Y      
Sbjct: 7   KLPIRALWLGLLSLLLVGCQIDSEP-----KSELEKIRERGVLRVGTLNNPLSYYIGPDG 61

Query: 63  PFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPG 122
           P GLDYELA++FA  LGVKL++     +S LF  L NG  D++AAGL  + ER+K+++ G
Sbjct: 62  PTGLDYELAREFAKELGVKLEMKPAYRLSSLFPALKNGEVDIIAAGLSQSEERLKDFRAG 121

Query: 123 PTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHV------VVNDLQ-----TLKETK 171
           P YY VSQQ+VYK G +RPR+   L   Q T+   +       VV+D         K+ K
Sbjct: 122 PAYYYVSQQVVYKKGDWRPRSFKQLVERQQTLLKDNPELAFFSVVDDSHFEHTLLAKQQK 181

Query: 172 FPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTW 231
           +P+  + VD      +L++ V +G+L +T+ADSV +SL QR++PELA A ++T++QP++W
Sbjct: 182 YPDFQFHVDSNSDVNDLLKKVSQGELLFTMADSVEVSLSQRIYPELAAAFELTEDQPISW 241

Query: 232 FSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQL 291
           F     D +L A +++FF  + + G LA +EEKY+GH   FDYVDTR F+RA+D  LP+ 
Sbjct: 242 FIRRSDDESLYALMIEFFGNLKQSGYLASLEEKYIGHIGAFDYVDTRAFIRALDTRLPRW 301

Query: 292 KPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQ 351
            PLF+KY+ E DWRL+AA+AYQESHW+  A SPTGVRG+MMLT  TA+S+G++DR D EQ
Sbjct: 302 TPLFQKYSAEFDWRLVAALAYQESHWNPYAKSPTGVRGLMMLTLPTARSVGVSDRLDPEQ 361

Query: 352 SISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADV 411
           SI GGV YL+ MM +VP+S+ E+E+IWFALA+YN+GY HM+DAR LT     +PDSWADV
Sbjct: 362 SIRGGVEYLRRMMERVPDSISEHEKIWFALASYNIGYGHMMDARRLTKSQGADPDSWADV 421

Query: 412 KQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKE 459
           K RLP L QK Y+++  YGYARG EA  YVENIR+Y  S++G+L++++
Sbjct: 422 KDRLPQLQQKKYFTQTRYGYARGDEARNYVENIRRYYQSIIGHLEQRQ 469