Pairwise Alignments

Query, 337 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

Subject, 342 a.a., Cro/Cl family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

 Score =  127 bits (320), Expect = 3e-34
 Identities = 97/344 (28%), Positives = 155/344 (45%), Gaps = 23/344 (6%)

Query: 4   EATHDQNEALTT---GARLRNAREQLGLSQQAVAERLCLKVSTVRDIEE---DKAPADLA 57
           +A H +  A T    G  LR ARE  G S   VA +L L V+++ ++E    DK P    
Sbjct: 2   KAAHPEVVAATRVNPGETLRQARESNGWSLAEVALKLNLTVASLGNLEAGAFDKLPGH-- 59

Query: 58  STFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSLGKRRKKRDGWLMTFT 117
            TF RGYIR+YA+L+ + +  L+   ++      A+ + + S    +   +    ++   
Sbjct: 60  -TFARGYIRAYAKLLGMDQTVLVQQFDQYTG-SDAQGSNVHSLGRIEEPVRVSHTILRIV 117

Query: 118 WLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQGQSVPLNT--------S 169
            L+L + +   G  WWQD+ + + +     +    E+       Q  PL+          
Sbjct: 118 SLLLLIAVIGGGFVWWQDQASLRNKEPVAMNPEHVEVEGADGTTQIHPLDEPEDQAVIEG 177

Query: 170 TTTDPATTSTPPASVDTTATNTQTPAVTAP----APAVDPQQNAVVSPSQANVDTAATPA 225
            T      + P +  D  A     PAV AP    APA     +A ++ + A   T A  A
Sbjct: 178 QTEGETALALPQSQDDADAQAGAEPAVPAPTTPTAPAAPNTGSAPIATAPAAPSTPAPAA 237

Query: 226 PTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLFSGMQRKDGN 285
           P     P          A    PVA    + + F ADCW ++TD  GK LFSG++RK  +
Sbjct: 238 PATHAAPTAPVAPAAPAAPTPAPVAGEGQVQIQFVADCWTQITDGNGKVLFSGLKRKGDS 297

Query: 286 LNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTL 329
             + G+ P+ +++G     Q+ Y G+PVD++ F  + + ARL L
Sbjct: 298 TAVNGKPPFAVRLGYARGAQVSYNGQPVDIAPF-TSGETARLKL 340