Pairwise Alignments

Query, 337 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

Subject, 260 a.a., transcriptional regulator, XRE family from Synechococcus elongatus PCC 7942

 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 28/81 (34%), Positives = 41/81 (50%)

Query: 3  TEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTVRDIEEDKAPADLASTFLR 62
          TE+     E    GA LR ARE  GL   AVA +  ++ S +  IE  +        F++
Sbjct: 2  TESLVYTEELYRIGAELRAAREAQGLDLAAVAAQCRVRSSYLEAIESGEVQRLPEPVFVQ 61

Query: 63 GYIRSYARLVHIPEEELLPGL 83
          G+IR+YAR + +  + LL  L
Sbjct: 62 GFIRTYARSLGLDPDTLLADL 82



 Score = 38.5 bits (88), Expect = 2e-07
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 225 APTAATTPDGAAPLPTDQAGVTTPVA-DPNALVMNFTADCWLEVTDATGKKLFSGMQRKD 283
           APTA T P+   P P + A  TTP+  +P  + + F    W E++   G+ +FSGM    
Sbjct: 144 APTA-TAPE--PPPPPEAALSTTPLEPEPRTVAIAFRGPAWAEIS-VDGEVVFSGMGTAG 199

Query: 284 GNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS 334
             L+ + +    +  G P  + +   G+       I   Q+ R+++ A+ S
Sbjct: 200 QQLSFSPKQEVTINPGRPDLIWLSRAGQAAQPLGTISQVQLYRISVQADPS 250