Pairwise Alignments

Query, 372 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI) from Escherichia coli BW25113

Subject, 431 a.a., flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase from Rhodopseudomonas palustris CGA009

 Score =  189 bits (479), Expect = 2e-52
 Identities = 130/399 (32%), Positives = 209/399 (52%), Gaps = 58/399 (14%)

Query: 6   PIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVRVSVPT 65
           P  R ++T++ VG+V +G GAPI VQSMTNT T DVE T+ QI AL R G+++VR++V  
Sbjct: 15  PAPRHQTTQVMVGDVAVGGGAPIVVQSMTNTDTADVEGTIKQIAALARAGSEMVRITVDR 74

Query: 66  MDAAEAFKLIKQQV-----NVPLVADIHFDYRIALK-VAEY-----GVDCLRINPGNIG- 113
            +AA A   I+  +       P++ D H+   I  K +AEY      +D  RINPGN+G 
Sbjct: 75  EEAAAAVPHIRDGIRKLGLTTPIIGDFHY---IGHKLLAEYPACAEALDKYRINPGNVGF 131

Query: 114 ---NEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEP-------------TPQAL 157
               + +   +V+ A   N  +RIG N GSL+++L  K  +              T +A+
Sbjct: 132 KNKRDTQFADIVEIAIKNNKAVRIGANWGSLDQELLTKLMDENAASANPRDVRAVTREAM 191

Query: 158 LESAMRHVDHLDRLNFDQFK--VSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARS 215
           ++SA+      + +   + K  +S K S V   +  Y+ LA + D  +HLG+TEAG    
Sbjct: 192 VQSALLSAARAEEIGLPKNKMILSAKVSAVQDLIAVYQDLASRSDYAIHLGLTEAGMGSK 251

Query: 216 GAVKSAIGLGLLLSEGIGDTLRVSLAADP----VEEIKVGFDILKSLRIRSRGINFIACP 271
           G V S+  LG+LL +GIGDT+R+SL  +P      E++VG ++L+++  R+      ACP
Sbjct: 252 GIVASSAALGILLQQGIGDTIRISLTPEPGGDRTREVQVGQELLQTMGFRTFVPLVAACP 311

Query: 272 TCSRQEFDVIGTVNALEQRLEDIITP--------------MDVSIIGCVVNGPGEALVST 317
            C R       T   L + ++D I                ++V+++GC+VNGPGE+  + 
Sbjct: 312 GCGR---TTSTTFQELARSIQDFIRDEMPEWRSRYPGVENLNVAVMGCIVNGPGESKHAN 368

Query: 318 LGV----TGGNKKSGLYEDGVRKDRLDNNDMIDQLEARI 352
           +G+    TG    + ++ DG +   L   ++    +A +
Sbjct: 369 IGISLPGTGETPAAPVFVDGEKFRTLRGENIAADFKALV 407