Pairwise Alignments

Query, 372 a.a., 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (NCBI) from Escherichia coli BW25113

Subject, 383 a.a., 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  416 bits (1069), Expect = e-121
 Identities = 213/364 (58%), Positives = 271/364 (74%), Gaps = 1/364 (0%)

Query: 7   IQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALERVGADIVRVSVPTM 66
           I RRKS +I+VG VPIG  APIAVQ+MTNT TTD+  T+ Q++A    GADIVRVSVP +
Sbjct: 12  IYRRKSRQIHVGPVPIGGDAPIAVQTMTNTLTTDIPGTIAQVQAAADAGADIVRVSVPDV 71

Query: 67  DAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNEERIRMVVDCAR 126
           D++ A K I ++  VP+VADIHF Y+  ++ AE G  CLRINPGNIG+E+R++ V+  AR
Sbjct: 72  DSSRALKEIVRESPVPIVADIHFHYKRGIEAAEAGAACLRINPGNIGDEKRVKEVIKAAR 131

Query: 127 DKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSVKASDVF 186
           D N  +RIGVNAGSLEK L +KY EP P+A++ESA+ H+  L   +F +FK+S KASDVF
Sbjct: 132 DNNCSMRIGVNAGSLEKHLLDKYAEPCPEAMVESALDHIKILQDNDFHEFKISCKASDVF 191

Query: 187 LAVESYRLLAKQIDQPLHLGITEAGGARSGAVKSAIGLGLLLSEGIGDTLRVSLAADPVE 246
           L+  +Y+ LA   D PLHLGITEAGG  SG +KSAIGLG LL  GIGDT+RVSL+ADPVE
Sbjct: 192 LSAAAYQALADATDAPLHLGITEAGGLMSGTIKSAIGLGNLLWMGIGDTIRVSLSADPVE 251

Query: 247 EIKVGFDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDVSIIGCV 306
           EIKVG+DILKSL +R RG+N I+CP+C+RQ FDVI TV ALEQRLE I TPM +SIIGCV
Sbjct: 252 EIKVGYDILKSLGLRHRGVNVISCPSCARQGFDVIKTVEALEQRLEHIKTPMSLSIIGCV 311

Query: 307 VNGPGEALVSTLGVTGGNKKSGL-YEDGVRKDRLDNNDMIDQLEARIRAKASQLDEARRI 365
           VNGPGEAL++ +G TGG   SG+ Y  G +  ++ N  MID +  ++  +A++LD     
Sbjct: 312 VNGPGEALMTDVGFTGGGAGSGMVYLAGKQSHKMSNEQMIDHIVEQVEKRAAELDAIEAA 371

Query: 366 DVQQ 369
           +  Q
Sbjct: 372 EAAQ 375