Pairwise Alignments

Query, 479 a.a., hydrogenase 4 membrane subunit (NCBI) from Escherichia coli BW25113

Subject, 615 a.a., NADH dehydrogenase I, L subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  180 bits (456), Expect = 1e-49
 Identities = 142/416 (34%), Positives = 216/416 (51%), Gaps = 39/416 (9%)

Query: 3   NLALTTLLLPFIGALVVSFSPQRRAAEWGVLF-------AALTTLCMLSLISAFYQADKV 55
           +L   T L P +G LV++FS  R       L        +ALTTL +     A      V
Sbjct: 2   SLLYLTFLFPLLGWLVLAFSLGRFGERTSALIGVGSIGLSALTTLWVGMDFLANPPEGGV 61

Query: 56  AVTLT---LVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGT 112
            +      +V       F L +D +S  +L VV  +G  + ++++ Y+  +       G 
Sbjct: 62  YIQHLWQWMVVGNFTPSFSLALDGLSLTMLGVVTGVGFFIHLFASWYMRGEE------GY 115

Query: 113 NRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQ-RSALKALLI 171
           +R++ +  +FI +M  LVL+  LL   L +E  G CS+ LI +Y  D+    +ALKA ++
Sbjct: 116 SRFFTYTNLFIASMLFLVLADDLLFVYLGWEGVGLCSYLLIGFYYKDRNNGAAALKAFIV 175

Query: 172 THIGSLGLYLAAATLFLQTGTFALSAMSELHGDARYLVYGG----------ILFAAWGKS 221
           T +G + L +    L+ + GT  +    EL   A  L   G          +L  A GKS
Sbjct: 176 TRVGDVFLAIGLFILYQELGTLNIH---ELLVRAPTLFAEGSPALSLACLMLLGGAVGKS 232

Query: 222 AQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGMVMALV 281
           AQLP+Q WL DAM  PTP+SA +HAA+MV  GVY+ AR        P V+  VG+V A+ 
Sbjct: 233 AQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLLAPEVLHLVGLVGAIT 292

Query: 282 TILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIVNHAFAKS 341
            +L GF   L Q D+KR+LA+ST++Q+G+MF  L +       A EG+I +++ HAF K+
Sbjct: 293 LVLAGFAA-LVQTDIKRILAYSTMSQIGYMFLALGVG------AWEGAIFHLMTHAFFKA 345

Query: 342 LFFLVAGALSYSC-GTRLLPRLRGVLHTLPLPGVGFCVAALAITGVP-PFNGFFSK 395
           L FL AGA+  +C   + + ++ G+  +LPL    F V   A+  +P   +GF+SK
Sbjct: 346 LLFLSAGAVIVACHHEQNIFKMGGLRKSLPLVYACFLVGGSALAALPLVTSGFYSK 401