Pairwise Alignments

Query, 479 a.a., hydrogenase 4 membrane subunit (NCBI) from Escherichia coli BW25113

Subject, 643 a.a., NADH dehydrogenase I, chain L (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  207 bits (526), Expect = 1e-57
 Identities = 164/518 (31%), Positives = 256/518 (49%), Gaps = 67/518 (12%)

Query: 4   LALTTLLLPFIGALVVSFSPQ----RRAAEWGVLFAALTTLCMLSLISAFYQ-------- 51
           L +  LLLPF+  L++    +    R A   G L   L  + +LS ++AF          
Sbjct: 3   LTILILLLPFLSFLILGIGGKWMSHRTAGAIGTLI--LGAVVVLSYVTAFQYFSAPRLED 60

Query: 52  ---ADKVAVTLTLVNVGDVALF--GLVIDRVSTLILFVVVFLGLLVTIYSTGYLTDKNRE 106
              A  +    T +   +   F  G+++D +S ++L V+  + L+V IYS GY+  +   
Sbjct: 61  GTFATLIPYNFTWLPFTETLRFDLGILLDPISVMMLIVISTVSLMVHIYSFGYMKGET-- 118

Query: 107 HPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDKAQRSAL 166
               G  RYYAFL +F  +M GLV+++ +    LF+E+ G  S+ LI +Y +  A  +A 
Sbjct: 119 ----GFQRYYAFLSLFTMSMLGLVVATNIFQMYLFWELVGVSSYLLIGFYYTKPAAIAAS 174

Query: 167 K-ALLITHIGSLGLYLAAATLFLQTGTFALS--AMSELHGDARYLVYG-GILFAAW-GKS 221
           K A ++T    LG  +         GTF  +   +S + G A  L    G++F    GKS
Sbjct: 175 KKAFIVTRFADLGFLIGILIYGYYGGTFGFTPDTVSLISGGASMLPLALGLMFIGGAGKS 234

Query: 222 AQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARA----IIDGGNIPHVIGGVGMV 277
           A  P+  WLPDAME PTP+SA +HAA+MV  GVY+ AR     I    +  H+I  VG  
Sbjct: 235 AMFPLHIWLPDAMEGPTPVSALIHAATMVVAGVYLVARMFPLFIAYAPDTLHMIAWVG-- 292

Query: 278 MALVTILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGL----SLSIFGSRLALEGSIAYI 333
               T  Y   +   Q D+KR+LA+STI+Q+G+M   L    S+      L    S+ ++
Sbjct: 293 --AFTAFYAASVACVQSDIKRVLAFSTISQIGFMMVALGVCTSMDPHHGGLGYMASMFHL 350

Query: 334 VNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGFF 393
             HA  K+L FL AG++ ++  +  +  + G+   +P+    F +A LAI G+PPF+GFF
Sbjct: 351 FTHAMFKALLFLGAGSIIHAVHSNEMSAMGGLRKYMPITHWTFLIACLAIAGIPPFSGFF 410

Query: 394 SKFPLFAAGFALSVEYWILLPAM--ILLMIESVASFAWFIRWFGRVVPGKPSEAVA---- 447
           SK  + AA F  S       PAM  ++ +I ++ +F  F  ++G     +P  A +    
Sbjct: 411 SKDEILAACFQYS-------PAMGWVMTVIAAMTAFYMFRLYYGIFWGAEPPRASSHSDH 463

Query: 448 -------DAAPL-----PGSMRLVLIVLIVMSLISSVI 473
                  +AAP      P +M   LI L V++ ++  I
Sbjct: 464 STPHGNLEAAPCRPHESPLAMTFPLIFLAVVTCLAGFI 501