Pairwise Alignments

Query, 387 a.a., EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI) from Escherichia coli BW25113

Subject, 400 a.a., HlyD family efflux transporter periplasmic adaptor subunit from Castellaniella sp019104865 MT123

 Score =  288 bits (738), Expect = 1e-82
 Identities = 160/386 (41%), Positives = 230/386 (59%), Gaps = 15/386 (3%)

Query: 14  RKYFSLLAVVLFIAFSGAYA-YWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKD 72
           RK   L A  +FI  +  Y  +W++      STDDAYV GN   +SAQ+ G+V  +   D
Sbjct: 12  RKRLLLGATAVFILIAVLYGIWWAIFASHYESTDDAYVHGNLVSVSAQIPGTVVSIGADD 71

Query: 73  TNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQS 132
           T  V QG  L++LD +D  IAL +A+  LA  VR T  L++Q+   +A+VA      +Q+
Sbjct: 72  TQTVTQGAHLITLDGSDTEIALAQAEAALAQTVRHTQTLFVQNDTLAADVAVGEANVEQA 131

Query: 133 -------LEDYNRRVPLAKQGVISKETLEHTKDTLISSKAAL---NAAIQAYKA----NK 178
                    D  RR  L   G +S E L H +  + S++A+L    A + A KA    N+
Sbjct: 132 DTLLHKAQNDLQRRNALRGSGGVSGEELLHAQVAVKSAQASLAQARAGLAASKAKLATNQ 191

Query: 179 ALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMA 238
           AL   + +   P V++AAD  ++AWLA +R  + +PVTG +AQRSVQ+G+ + PG  LM 
Sbjct: 192 ALTRGSTVATHPDVLQAADRVRQAWLAQERIRVPAPVTGMVAQRSVQLGQRIQPGTPLMT 251

Query: 239 VVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPA 298
           +VP   +WV ANFKE QL  ++ GQ V+++SDLYG +V +HG V G++ G+G+AF+LLPA
Sbjct: 252 IVPLNSLWVEANFKENQLHAMKPGQKVSLVSDLYGSDVTYHGTVVGVSAGSGSAFALLPA 311

Query: 299 QNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSM 358
           QNA+GNWIK++QRVPV + LDPKEL EHPLR+GLSMT  +D  +       + A+  T  
Sbjct: 312 QNASGNWIKVIQRVPVRIELDPKELQEHPLRVGLSMTVDVDLSSTPKQSPNQFAAQSTDK 371

Query: 359 PAYTSKALVIDTSPIEKEISNIISHN 384
           P  ++     D + ++  I  II  N
Sbjct: 372 PVLSTPVYDHDPAQVDAAIKRIIQDN 397