Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 391 a.a., Integrase from Pseudomonas stutzeri RCH2

 Score =  333 bits (855), Expect = 4e-96
 Identities = 164/387 (42%), Positives = 251/387 (64%), Gaps = 7/387 (1%)

Query: 2   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ 61
           LT  Q+++A P++  Y L DG GL+L++  +G K W+ R+++DGK+  +++G    +TL 
Sbjct: 3   LTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVTLA 62

Query: 62  EARDKAWTARKDISVGIDP------VKAKKASSNNNSFSAIYKEWYEHKKQVWSVGYATE 115
           +AR  A  AR+ ++ G  P      ++A+ A S  N+F ++  EW++HK   WSVGYA +
Sbjct: 63  QARQLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYAGD 122

Query: 116 LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG 175
           + + F+ D+ P +G L + DI+PMQ L+V RR E RGA+E+  K R+RC EV+R+AI TG
Sbjct: 123 VVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIATG 182

Query: 176 RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT 235
           RA+YNP  D+  A++    +++PFLP  +IPA  +++    G  V  IAT++L  T +RT
Sbjct: 183 RAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLILTGVRT 242

Query: 236 KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG 295
            ELR + W   D +  +  I A+ MK R+ H+VP+S Q V +L  L  IT   +   F G
Sbjct: 243 AELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGYT-LAFPG 301

Query: 296 RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS 355
           RND  KP+ E A+  ++K+ GY+G  +GHGFRH  ST ++E  +P++ +E QLAH +  S
Sbjct: 302 RNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKNS 361

Query: 356 VRGIYNHAQYLDKRREMMQWWADWLDE 382
           +RG YNHAQYL+ RREM+QW+A+ +DE
Sbjct: 362 IRGTYNHAQYLEGRREMLQWYANHVDE 388