Pairwise Alignments

Query, 385 a.a., CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase (NCBI) from Escherichia coli BW25113

Subject, 402 a.a., integrase arm-type DNA-binding domain-containing protein from Dyella japonica UNC79MFTsu3.2

 Score =  238 bits (608), Expect = 2e-67
 Identities = 145/389 (37%), Positives = 212/389 (54%), Gaps = 11/389 (2%)

Query: 1   MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTL 60
           MLT   + A KP+ K YR  D  GL + V  +G K W+ RY+  G+  +L +G YP ++L
Sbjct: 1   MLTDTLVRALKPRHKVYRKADAGGLCIEVRPTGAKKWRFRYRFAGRANMLDLGDYPRVSL 60

Query: 61  QEARDKAWTARKDISVGIDPVKAKKAS------SNNNSFSAIYKEWYEHKKQVWSVGYAT 114
           Q+AR +    +  ++ G DP +A++        + +++F AI  EW    +Q +    A+
Sbjct: 61  QDARRERDRQKHLLARGEDPSQARRKEQLLVNVAKDDTFEAIANEWLG--QQDFEPSTAS 118

Query: 115 ELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVT 174
           +   +FD  I P IG   ++ I P + L +IRR E  G  + A + R+R G+V RYAI T
Sbjct: 119 KARMLFDQHIFPWIGRRPVRGISPTECLALIRRAEHAGKYDIAKRIRQRIGQVCRYAITT 178

Query: 175 GRAKYNPAPDLADAMKGYRKKNFPFLP-ADQIPAFNKALATFSGSIVSLIATKVLRYTAL 233
           GRA  NPA  L  AMK  +  +   L    ++ A  +A+  + G  V+ +A +V  Y  +
Sbjct: 179 GRANVNPAESLKGAMKIVKAVHHAALTDRKEVGALLRAIQAYQGHFVTRMAMQVAPYVFV 238

Query: 234 RTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVF 293
           R  ELR M W  +D +     + A  MK R  H+VP++ QVV LL  + S+T     +VF
Sbjct: 239 RPGELRHMEWTELDLDGAEWRLPAGKMKMRVPHIVPLARQVVALLKEIQSLTGR-GRYVF 297

Query: 294 AGRNDKKKPICENAVLLVIKQIGYEGLES-GHGFRHEFSTIMNEHEWPADAIEVQLAHAN 352
                  +P+ +N +   ++++GY   E+  HGFR   STI+NE  W  D IE QLAH  
Sbjct: 298 PSMRSGSRPMSDNTINASLRRMGYTKDEATAHGFRSTASTILNEMGWNGDWIERQLAHCE 357

Query: 353 GGSVRGIYNHAQYLDKRREMMQWWADWLD 381
              VRG YN+AQYL  RREMMQ WAD LD
Sbjct: 358 KDGVRGSYNYAQYLPGRREMMQAWADLLD 386