Pairwise Alignments

Query, 336 a.a., beta-methylgalactoside transporter inner membrane component (NCBI) from Escherichia coli BW25113

Subject, 333 a.a., ribose ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  193 bits (491), Expect = 4e-54
 Identities = 122/330 (36%), Positives = 184/330 (55%), Gaps = 23/330 (6%)

Query: 5   NKKSFLT--YLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSNILTQSSVRIIIALGVAGL 62
           N+K  L+  +L E    + LL L+ ++ F +P F ++ NL NIL Q+SV  IIA+G+  +
Sbjct: 19  NRKKLLSKEWLIEQKSLIALLFLVVVVSFLNPNFFTVDNLLNILRQTSVNAIIAVGMTLV 78

Query: 63  IVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMATMPIALVILIVCAIGAVIGLI 122
           I+T G DLS G  + L    AATL+     A +V P +  +P AL+       GA +G I
Sbjct: 79  ILTAGIDLSVGSVLALCGAFAATLV-----AMEV-PVLVAVPTALLA------GAALGAI 126

Query: 123 NGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASPISGFDSGFSTFAQGFVALGS-- 180
           +G+IIA   V  FI TL TM ++ G+  +Y D     PIS   +GF+  A  F   G+  
Sbjct: 127 SGIIIAKGKVQAFIATLVTMTLLRGVTMVYTD---GRPIS---TGFTDTADTFAWFGTGY 180

Query: 181 -FRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVGLNLLMIYALSG 239
              +    +  ++  A  W L N TRFG+ ++A+GGN  A ++SG+NV    + +YA+ G
Sbjct: 181 TLGIPVPVWLMVVVFAGAWYLLNHTRFGRYVYAVGGNESATRLSGINVDRVKIGVYAICG 240

Query: 240 VFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVI 299
           +  A  G++   R+ SA    G  YELDAIAA V+GG S  GG G ++G + G +I   +
Sbjct: 241 LLAALAGIIVTSRLSSAQPTAGMGYELDAIAAVVLGGTSLMGGKGRIMGTLIGALIIGFL 300

Query: 300 NYGLTYIGVNPYWQYIIKGAIIIFAVALDS 329
           N  L  + V+ Y+Q I K  +I+ AV +D+
Sbjct: 301 NNALNLLDVSSYYQMIAKAVVILLAVLVDN 330