Pairwise Alignments

Query, 315 a.a., tRNA-dihydrouridine synthase C (NCBI) from Escherichia coli BW25113

Subject, 362 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (341), Expect = 1e-36
 Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 3   VLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELQNASRTPSG 62
           ++LAPM GV DS  R L    +DY   ++    V  + L  +    + P L   +     
Sbjct: 14  IMLAPMAGVTDSPFRRL---AHDYGCPLSWTEMVASRELLRERARGVDPRLGGGAEAGRA 70

Query: 63  TLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQG 122
               VQL G  P  +AE A R    G+  +D+N GCP + V G  GG+ L++D  L  + 
Sbjct: 71  GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130

Query: 123 AKAMREAVPAHLPVSVKVRLGWDSGEKK-FEIADAVQQAGATELVVHGRTKEQGYRAEHI 181
            +A+  AV   LPVS+K+RLGWD   +   E+A   + AG + L VHGRT+ Q Y     
Sbjct: 131 LEAVVGAVT--LPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQMYDGR-A 187

Query: 182 DWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIP 231
           DW AIG +++ +++PVIANG++ +   A++ +A++G D VMIGR AL  P
Sbjct: 188 DWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAP 237