Pairwise Alignments

Query, 308 a.a., predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) from Escherichia coli BW25113

Subject, 383 a.a., branched-chain amino acid ABC transporter substrate-binding protein from Pseudomonas fluorescens FW300-N2C3

 Score =  186 bits (473), Expect = 6e-52
 Identities = 108/270 (40%), Positives = 159/270 (58%), Gaps = 10/270 (3%)

Query: 1   MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGEIRF 60
           ++   +++K +G   AV+D++L  Q+G F   +G+SGSGKSTTL M+       SGEI  
Sbjct: 15  LVSLRNLNKHYGDFAAVDDISLEIQDGEFLTFLGSSGSGKSTTLSMLAGFETPSSGEILV 74

Query: 61  AGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMAL 120
            G+ + ++P    +R +G   Q   LFPH SV  NIA    ++K + A  + R+D ++ L
Sbjct: 75  GGKSLVNVP--PHKRDIGMVFQRYSLFPHLSVRDNIAFPLAIRKLASAERERRVDAMLKL 132

Query: 121 LGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRI 180
           + L      R P QLSGGQQQRV +ARAL  +P++LLMDEP GALD   R  LQ E+ ++
Sbjct: 133 VQL-GEFAHRRPSQLSGGQQQRVAIARALVYEPRILLMDEPLGALDKKLREDLQDELRQL 191

Query: 181 HRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSEL 240
           HR LG TIV VTHD +EA+RL++ + +  HG++V  G+   +   P N FV  F G S  
Sbjct: 192 HRRLGITIVYVTHDQEEAMRLSQRIAIFSHGKIVGLGSGYDLYQNPPNAFVASFLGNS-- 249

Query: 241 GVRLLSLRSVADYVRREERADGEALAEEMT 270
               L L++  + V   E   G++L+  +T
Sbjct: 250 --NFLKLKAQGNAVATFE---GQSLSIRLT 274