Pairwise Alignments

Query, 552 a.a., flagellar M-ring protein (NCBI) from Escherichia coli BW25113

Subject, 268 a.a., type III secretion apparatus lipoprotein, YscJ/HrcJ family from Pseudomonas syringae pv. syringae B728a

 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 31  AAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFS-EASGAIEVPADK 89
           +A  +++ ++L     D   LF+ LS+QD   +V++L   +I  R   E +G +   A  
Sbjct: 5   SAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATS 64

Query: 90  VHELRLR-LAQQGLPKGGAVGF-ELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPV 147
                +R L   GLP+       ++  +E    +   E+  Y  AL  EL  T+  I  V
Sbjct: 65  DMNRAVRVLNAAGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGV 124

Query: 148 KGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQI-SAIVHLVSSAVAGL 202
             ARVH+ +P+  +   E   P AS  V +    ALD   +   I  +V+S++ G+
Sbjct: 125 IVARVHVVLPE-RIAPGEPVQP-ASAAVFIKHSAALDPDSVRGRIQQMVASSIPGM 178