Pairwise Alignments

Query, 500 a.a., putative tripeptide transporter permease (NCBI) from Escherichia coli BW25113

Subject, 516 a.a., amino acid/peptide transporter (RefSeq) from Shewanella sp. ANA-3

 Score =  356 bits (913), Expect = e-102
 Identities = 183/497 (36%), Positives = 298/497 (59%), Gaps = 17/497 (3%)

Query: 11  SVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALV 70
           ++  N   +  +F  +  IELWERFGYYG+Q ++  ++V++LG  ++ +  ++S+ +AL+
Sbjct: 2   TLGTNQVSKTHSFMTVSLIELWERFGYYGMQALIVYFMVQRLGFDDSRANLVWSACAALI 61

Query: 71  YGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMAAIAVGNGLFK 130
           Y   AIGGW+GDK+LGTKR ++LGA +L++GYAL+     +   ++  +  I VGNGLFK
Sbjct: 62  YVSPAIGGWVGDKILGTKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVGNGLFK 121

Query: 131 ANPSSLLSTCYEKNDPRLDGAFTMYYMSVNIGSFFSMIATPWL--------AAKYGWSVA 182
            N  +L+   YE +D ++D AFT+YYM+VN+GS FSM+ TPW+          ++GW  A
Sbjct: 122 PNAGNLVRKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAA 181

Query: 183 FALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINYRNLLLTIIGVVALIAIATWLLHNQ 242
           FA+  VGL++ + N+A   + +  YGS+PD  P+N +NL + ++     +  +  +L  +
Sbjct: 182 FAVCCVGLIVGLGNYALMHKSLANYGSEPDTRPVNKKNLAIVLVLAALSVVASAIILEYE 241

Query: 243 EVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFF 302
           +VAR+ +      ++ IF       + + R  +I A IL ++ + FF+ Y QM TSL  F
Sbjct: 242 DVARVFVYAAGVAVLGIFFHLIRTSEPSERAGLIAALILTVQTVFFFIFYQQMSTSLALF 301

Query: 303 AIRNV--EHSILGLAV---EPEQYQALNPFWIIIGSPILAAIYNKMG---DTLPMPTKFA 354
           A+RNV  +  + G  +    P Q+QALNP WI++ SP+LA  Y+  G       +  KFA
Sbjct: 302 ALRNVDWDFQVFGTHLWTWSPAQFQALNPIWIMVLSPVLAWSYSWAGRNNKDFSIAAKFA 361

Query: 355 IGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQR 414
           +G  + +  F I     +FA + G  S   ++  Y   S+GEL++SGLGLAM+A+ VP R
Sbjct: 362 LGFAVVAIGFFIYGFAGQFAVE-GKTSSWVMIWGYASYSLGELLVSGLGLAMIARYVPAR 420

Query: 415 LMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDPLMSLEVYGRVFLQIGVATAVIAVL 474
           + GF+MG++F+ +  +  +GG VA   +VP ++ DPL +L VY  +F ++G+A  V   +
Sbjct: 421 MGGFMMGAYFVASGISQYLGGVVANFASVPQDLVDPLQTLPVYTNLFNKLGIAAVVCTFI 480

Query: 475 MLLTAPKLHRMTQDDAA 491
            L   P + R+T+   A
Sbjct: 481 ALAVLPLMRRLTESHHA 497