Pairwise Alignments

Query, 352 a.a., electron transport complex protein RnfD (NCBI) from Escherichia coli BW25113

Subject, 399 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (285), Expect = 4e-30
 Identities = 90/326 (27%), Positives = 148/326 (45%), Gaps = 54/326 (16%)

Query: 26  LAAVPGIAAQLWFFG-WGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLL 84
           L A  G+AA +W+   W   +  +  +V  +  E L   +R   V     +    +T +L
Sbjct: 105 LTADSGVAALMWYGACWFLPIYAVTFAVGGIW-EVLFATVRGHEV-----NEGFFVTSIL 158

Query: 85  LAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQM---TS 141
            A+++P   P WMV LG  F V++AK+++GG G+N  NPA+ G   L  ++P+ M   T+
Sbjct: 159 FALTLPATIPLWMVALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLNMSGDTT 218

Query: 142 WLPPHEIAVNIPGFIDAIQVIFSGHTA-SGGDMNTLRLGIDGISQATPLDTFKTSVRAGH 200
           W+               +   FSG TA S     TL  G +   QA              
Sbjct: 219 WV---------------VADGFSGATALSQAAQGTLEYGFN---QAW------------- 247

Query: 201 SVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGW 260
                  +  + G + G+  +   LA L GG+ +++ +   W I    +V +   ++L  
Sbjct: 248 -------WDAFLGFIPGSVGEVSTLAILLGGLVIIYTRIASWRIVGGVMVGMIAVSLLLN 300

Query: 261 LFSPET---LAAPQI-HLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRS 316
               +T    A P   H++ G    G  F+ TDPV+AS TN+ +  +G L G +   IR 
Sbjct: 301 AIGSDTNPMFAMPWYWHMVLGGFAFGMMFMATDPVSASFTNQAKWAYGILIGAMAVFIRV 360

Query: 317 FG-GYPDGVAFAVLLANITVPLIDYY 341
               +P+G+  A+L AN+  PL D++
Sbjct: 361 INPAFPEGMMLAILFANLFAPLFDHF 386