Pairwise Alignments

Query, 352 a.a., electron transport complex protein RnfD (NCBI) from Escherichia coli BW25113

Subject, 404 a.a., Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  119 bits (298), Expect = 1e-31
 Identities = 96/332 (28%), Positives = 152/332 (45%), Gaps = 46/332 (13%)

Query: 22  LLVLLAAVPGIAAQLWFFG---WGTLVQI---LLASVSALLAEALVLKLRKQSVAATLKD 75
           LL   A   G+  Q  FFG   +G    +   L A + +L  E +  K+R+Q +      
Sbjct: 90  LLPFNAITGGLGEQSGFFGLFGYGLSFYLPIYLTALLVSLFWEMVFAKVRRQEL-----H 144

Query: 76  NSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISF 135
               +T LL  + +P   P W+V LG  F VI+AK+++GG+G N  NPA+ GY  +  ++
Sbjct: 145 EGFFVTALLFTLILPVSTPLWIVALGITFGVIMAKEVFGGMGYNFLNPALAGYAFIYFAY 204

Query: 136 PVQMTSWLPPHEIA--VNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFK 193
           P ++       +IA  V + GF  A  +I    TA+G      ++  +G +         
Sbjct: 205 PTEVA------QIAQFVAVDGFSGATTLI---QTAAG------KMSFEGYTWY------- 242

Query: 194 TSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLA 253
                  +    + +  + G   G+  +   LA L GG+ LL  +   W +    +  + 
Sbjct: 243 ------QAFSDPLWWDAFFGFTVGSIAETSTLAILIGGLLLLLTRLADWRVVAGVMAGMV 296

Query: 254 LCAMLGWLFSP---ETLAAPQI-HLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGL 309
             A+L  L      E  A P   HL++G   LG  F+ TDPVT + T +G+  +G L G 
Sbjct: 297 ATAVLFNLIGSAKNEMFAMPWTWHLVTGGFALGMMFMATDPVTTAYTRQGKFAYGVLIGF 356

Query: 310 LVWLIRSFG-GYPDGVAFAVLLANITVPLIDY 340
           +  LIR      P+G+  A+L AN+  PL DY
Sbjct: 357 MTVLIRVLNLKMPEGIMLAILFANLWAPLFDY 388