Pairwise Alignments

Query, 344 a.a., predicted inner membrane protein (NCBI) from Escherichia coli BW25113

Subject, 368 a.a., transport protein from Xanthomonas campestris pv. campestris strain 8004

 Score =  114 bits (284), Expect = 5e-30
 Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 41/336 (12%)

Query: 30  AAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNE 89
           A  II+P +LA F A+I NP+++ + +  +PR L   +++ + +   V L A L     E
Sbjct: 46  AQTIILPVMLAAFFALIGNPILRGLRKLYIPRFLGALMILCLGLAGTVALAAQLAGPAAE 105

Query: 90  LTRTLPQYRNSIMTPLQALEPLLQRV-----------------GIDVSVDQLAHYIDPNA 132
             +  P+    I   ++     +Q+                  GI +   QL    DP  
Sbjct: 106 WVQQAPRQMRQIARDVRDFTKPVQQANQAAENFARAAGGEGARGIQIVRTQLD---DPYK 162

Query: 133 AMTLLTNLLTQLSNAMSSIFLLLLTVLFMLL-------EVPQLPGKFQQMMARPVEGMAA 185
           ++T    L      A S + ++LLT  FM+         +  LP + QQ     +  M  
Sbjct: 163 SLTRTPKL------AASVLAVVLLTFFFMVYGESLQRHAIALLPNRQQQRFTTEI--MLD 214

Query: 186 IQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRF--AFVWGLLAFALNYIPNIGSVL 243
           I+R    VS Y++  + I+++ GLV   +L  L +    A +WG +   LN+ P +G ++
Sbjct: 215 IER---EVSRYVLTISVINMLVGLVFAGILYVLKIPLPEALLWGTVVALLNFAPYVGPLI 271

Query: 244 AAIPPIAQVLV-FNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFW 302
             +  +    V F     +LL    YL ++ + G ++ P ++GR + +S L++ L+L+ +
Sbjct: 272 GVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMAISPLMLILALMLF 331

Query: 303 GWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLL 338
           GWL G VG+LL+VPL + +K+ L +  G Q  A LL
Sbjct: 332 GWLWGMVGLLLAVPLLVCIKMVLSRVEGMQRWARLL 367