Pairwise Alignments

Query, 417 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

Subject, 404 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score =  106 bits (264), Expect = 1e-27
 Identities = 106/398 (26%), Positives = 171/398 (42%), Gaps = 13/398 (3%)

Query: 18  QSISQPNQF--IKRGTPQFMRVTLALFS--AGLATFALLYCVQPILPVLSQEFGLTPANS 73
           Q +S  NQ   +   +P   +  L LF+  +GL+  A +Y  QP+L  LS +F ++ A  
Sbjct: 2   QLVSNQNQIDGMATSSPPLSQGLLLLFAIASGLSV-ANVYYAQPLLDALSDDFKISQAAV 60

Query: 74  SISLSISTAMLAIGLLFTGPLSDAIGRKPVMVTALLLASICTLLSTMMTSWHGILIMRAL 133
              ++ +    A+ LL   PL D + RK +M   LL A +C L+ T+  +    +++  +
Sbjct: 61  GGVVTATQLGCALALLLLVPLGDKVPRKMLMGIQLL-ALVCALV-TVGLARSSYVLLAGM 118

Query: 134 IGLSLSGVAAVG--MTYLSEEIHPSFVAFSMGLYISGNSIGGMSGRLISGVFTDFFNWRI 191
           + + L G A     + Y +           +G   SG  IG +  R+ SG  +D   WR 
Sbjct: 119 LAVGLLGTAMTQGLIAYAASAAGEDERGRVVGAAQSGVFIGLLLSRVFSGAVSDVTGWRG 178

Query: 192 ALAAIGCFALASALMFWKILPESRHFRPTSLRPKTLFINFRLHWRD-RGLPLLFAEGFLL 250
                    L  A   WK LP +   +   LR  TL  +     RD + L +      L+
Sbjct: 179 VYLCAAIMMLCLAWPLWKRLP-AIPVQADGLRYLTLIKSMWCLLRDDKVLQVRGVLAMLM 237

Query: 251 MGSFVTLFNYIGYRLMLSPWHVSQAVVGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFS 310
             +F   ++ +   L  SP+H S  V+G   L  + G  ++ KAG  + +         S
Sbjct: 238 FAAFNVFWSALVLPLSASPYHFSHTVIGAFGLVGVIGALAASKAGRWSDQGHAQRTSAVS 297

Query: 311 TGVMLFGL--LMTLFSSLWLIFAGMLLFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLF 368
             V+L     L  + SSLW + AG++L   G  A H    S I   + +A  +   +Y+ 
Sbjct: 298 LAVLLLAWWPLSLMESSLWALVAGIILLDLGGQALHVTNQSLIFRSSPQAHSRLVGVYML 357

Query: 369 SYYLGSSIAGTLGGVFWHNYGWNGVGAFIALMLVIALL 406
            Y +GS +        +   GW GV    A +  IALL
Sbjct: 358 FYAVGSGLGAISTTAIYAARGWQGVCFLGAAVSFIALL 395