Pairwise Alignments

Query, 406 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

Subject, 414 a.a., ROK family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  128 bits (321), Expect = 4e-34
 Identities = 91/325 (28%), Positives = 155/325 (47%), Gaps = 7/325 (2%)

Query: 20  AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI--KEAGNRGRPAVG 77
           AV+  +   G   R+D++R   ++P S+T +  +++EA  + E+    +E G RGRP V 
Sbjct: 30  AVFEHVRAAGHAPRMDIARALGISPGSVTTLTSDLIEAGFLTEIAAPARETG-RGRPPVA 88

Query: 78  LVVETEAWHYLSLRISRGEIFLALRDLSSK--LVVEESQELALKDDLPLLDRIISHIDQF 135
           L V   A + L LR+S     ++L D S         + +        LL  + + ID+ 
Sbjct: 89  LAVVPAARYVLGLRLSDEMHTVSLSDFSGTELATAHRASQPGRYAVEALLTEMATLIDEV 148

Query: 136 FIRHQKKLERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHD 195
                   +R+ ++ + LPG +  E G V   P     ++  L   +E   G+P ++++D
Sbjct: 149 LAAAALPRDRVAALGVGLPGAVHHETGRVAWSPILAG-QDHALQAIIEDRFGLPAHLEND 207

Query: 196 ISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGK 255
            +  T+AE  FGA R  +D   V I+  VG G++ +  L        +E+GHT+V   G 
Sbjct: 208 ANVLTLAELWFGAGRAMQDFAVVTIEQGVGMGLVLNNRLFRGAQGLGLELGHTKVQLDGA 267

Query: 256 RCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDII 315
            C CG  GCLE   +  +++  A   L++   S      + ++SL   A  G+  AK I 
Sbjct: 268 LCRCGQRGCLEAYLADYALVREASTALDRDPRSAQTAAAM-LESLFDQAKAGNGAAKAIF 326

Query: 316 TGVGAHVGRILAIMVNLFNPQKILI 340
              G  +   LA +V LF+P+ I++
Sbjct: 327 QRAGRFLSLGLANVVQLFDPELIIL 351