Pairwise Alignments

Query, 418 a.a., putative chloride channel (VIMSS) from Escherichia coli BW25113

Subject, 454 a.a., chloride channel from Xanthomonas campestris pv. campestris strain 8004

 Score =  112 bits (279), Expect = 3e-29
 Identities = 100/377 (26%), Positives = 170/377 (45%), Gaps = 30/377 (7%)

Query: 51  WRRLLTPALGGLAAGLLLMGWQKFTQQRPH---------APTDYMEALQTDGQFDYAASL 101
           W  LLTP +        L+ W      RP          A  ++ +    +       S+
Sbjct: 61  WALLLTPGI------FALLAWLTSGALRPTRGSGIPQVIAALEHPDPAFRETNLSLRVSV 114

Query: 102 VKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKL--WIACGAAAGMAAA 159
            K   + L +  G+++GREG  + + A     F + F  R+  +L  ++  G AAG+AAA
Sbjct: 115 GKLALTTLSLLGGASVGREGPTVHVGASLMHVFGRWFGFREPRELSHFLLAGGAAGIAAA 174

Query: 160 YRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQAR 219
           +  PLAG +F  E L G       G ++ + +V  +VS  +  +      V +++ +   
Sbjct: 175 FNTPLAGVVFAIEELSGRFEHRFSGTLLTAVIVGGVVSLGLLGNYTYFGKVAVALPLGKA 234

Query: 220 DYALIIS---TGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLAL--GGLIVGLLSLFT 274
             A+++     G+L GL   ++L  ++   R   +L+   P  LA   G  +VGL  +F 
Sbjct: 235 WLAILLCGSVAGLLGGLFARMVLASVSGRPRWLAALRQRHPVLLAALCGVALVGLALVFG 294

Query: 275 PAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGM 334
              +G GY   +S +    ++    G  L KL A L S  +G PGG+F+P L +G  +G 
Sbjct: 295 QGAFGTGYEQARSLVQGHAVVGHEFG--LMKLVANLVSYVAGIPGGLFSPALAVGAGLG- 351

Query: 335 LYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIAC 394
               +L +  P  +  T +L   GM   L   T AP+ S ++  E+T   Q+L  +L   
Sbjct: 352 ---HNLSVLMPSVDPRTFVL--LGMCAYLTGVTQAPLTSAVISLELTDTSQMLLPILATV 406

Query: 395 VIASVISRTLHRDSIYR 411
           ++A  +S  + +  IYR
Sbjct: 407 LLARAVSGLVCKTPIYR 423