Pairwise Alignments

Query, 418 a.a., putative chloride channel (VIMSS) from Escherichia coli BW25113

Subject, 605 a.a., Chloride channel core (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  125 bits (314), Expect = 3e-33
 Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 14/369 (3%)

Query: 44  AATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEAL-----QTDGQFDYA 98
           AA    PW  +    + GL  G L+   Q+F        TD  +A+        G     
Sbjct: 77  AARAYRPWVIVAALGITGLVTGWLV---QRFLPNSLDGMTDGTDAMIRAFHAEKGVIRRR 133

Query: 99  ASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRF--TPRQEWKLWIACGAAAGM 156
           A L+K L S+  + +G + GREG +  + A   S  + R   +PR+   L +A GAA G+
Sbjct: 134 APLLKGLTSICTIAAGGSAGREGPVSQIGAGIGSWLSMRLGLSPRERRILMLA-GAAGGL 192

Query: 157 AAAYRAPLAGSLFIAEVLFGTMMLA-SLGPVIISAVVALLVSNLINHSDALLYNVQLSVT 215
            A +RAPL G+L   EVL+     + +L P ++S+VV+  +   +  +  +    + S T
Sbjct: 193 GAVFRAPLGGALTAIEVLYREDFESEALLPAVLSSVVSYSLFTFVFGTAPIFGIPRFSFT 252

Query: 216 --VQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLIVGLLSLF 273
             ++   Y L+       G        ++     G +  ++   W  ALGG+++GL  + 
Sbjct: 253 SVLELPWYLLLSLACAATGWAYVRTFRVLKYSVFGKLRARVGIMWTTALGGVLMGLFGIL 312

Query: 274 TPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIG 333
            P V  +GY  ++  +     ++ +  I L K  A   + GSG  GG+F P LF+G   G
Sbjct: 313 YPPVLSDGYGWIEQAILGQLPVVTMVTILLGKTLATAVTLGSGMSGGMFAPALFVGGMTG 372

Query: 334 MLYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIA 393
            + G +     P          L GMA   A   HAPI   +M+CE+T  Y LL  L+++
Sbjct: 373 GVVGFAAQQVQPGVVTQPGGYVLVGMAAFFAGIAHAPIGPLVMVCELTQGYGLLAPLMLS 432

Query: 394 CVIASVISR 402
             +  ++ R
Sbjct: 433 SAVCILLGR 441



 Score = 33.9 bits (76), Expect = 1e-05
 Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 303 LCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATL 362
           L  +C + A   +G  G    P   IG  IG      LGL  P    I +L G  G    
Sbjct: 140 LTSICTIAAGGSAGREG----PVSQIGAGIGSWLSMRLGL-SPRERRILMLAGAAGG--- 191

Query: 363 LAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTL 404
           L A   AP+   L   E+          L+  V++SV+S +L
Sbjct: 192 LGAVFRAPLGGALTAIEVLYREDFESEALLPAVLSSVVSYSL 233