Pairwise Alignments

Query, 418 a.a., putative chloride channel (VIMSS) from Escherichia coli BW25113

Subject, 562 a.a., Chloride channel core (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  149 bits (375), Expect = 3e-40
 Identities = 117/421 (27%), Positives = 209/421 (49%), Gaps = 24/421 (5%)

Query: 7   IATVVGILAAFAVAGFRHAMLLLEWL-FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAG 65
           IA  VGI A FA   FR  +  L+ + + + D  ++++ A  L  +  ++ P LGGL  G
Sbjct: 40  IALAVGIAAGFAALIFRKGIHWLQTMAYGHEDVRAVIDHAAGLPWYWLVIVPTLGGLVVG 99

Query: 66  LLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMIL 125
           L+L  +    + R  A      AL  +G+ +  A +  ++AS + +++G + GREG ++ 
Sbjct: 100 LILHFFTDDGRVRSVADVIEGSALY-EGRVEKRAGIASAVASWITLSTGGSSGREGPVVH 158

Query: 126 LAALAASCFAQRF-----TPRQEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMML 180
           LAA+ +S  + R      T R      + C  AA ++A++ AP+AG+LF  EV+     +
Sbjct: 159 LAAVISSWVSNRIHADGITGRD----LLGCAVAAAVSASFNAPIAGALFALEVVLRHFAV 214

Query: 181 ASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALIISTGVLAGL-CGPLLL 239
            +  P++I++    ++ N +   D   +++       A  + + +   +L GL CG + +
Sbjct: 215 HAFAPIVIASAAGTVI-NRLEFGDVTEFSLP---EANALAFYVELPAFLLLGLVCGLVAI 270

Query: 240 TLMNACH-----RGFVSLKLAPPWQL--ALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAP 292
            LM +          +      P  L  A  G+++GLL+++ P + G GY T  + LT+ 
Sbjct: 271 VLMKSVFWTEDFANHLQKVTGLPRYLRPAFAGVLLGLLAIWFPHIIGVGYETTTNALTSQ 330

Query: 293 PLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITL 352
            LL       + K+ AV  + G    GG+F+P+L +G   G+ +G      FPD      
Sbjct: 331 LLLHEAIVFAILKVVAVAITIGGRMGGGIFSPSLMVGALTGLAFGMIATGVFPDVSGSEA 390

Query: 353 LLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVI-SRTLHRDSIYR 411
           L  L GM  + AA   API +TL++ E+TG++Q    +++A  +++ + SR + R     
Sbjct: 391 LYALAGMGAVAAAVLGAPISTTLIVFELTGDWQTGLAVMVAVSLSTALASRVVDRSFFLT 450

Query: 412 Q 412
           Q
Sbjct: 451 Q 451