Pairwise Alignments

Query, 308 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

Subject, 334 a.a., oligopeptide transport ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  251 bits (641), Expect = 2e-71
 Identities = 141/310 (45%), Positives = 193/310 (62%), Gaps = 12/310 (3%)

Query: 6   LTLRDVHINFPARKNWLGKTTE-----HVHAINGIDLQIRRGETLGIVGESGCGKSTLAQ 60
           LT+  +   F     WL +  E     ++ A+N I   +  G  L IVGESGCGKST+A+
Sbjct: 11  LTVDRLVKTFDVSAPWLNRVVERKPRQYLQAVNDISFTVPAGGCLSIVGESGCGKSTVAR 70

Query: 61  LLMGMLQPSHGQYI----RSGSQRIMQMVFQDPLSSLNPRLPVWRIITEPLWIAK-RSSE 115
           L+ G+ +P+ G       +SG+    QM+FQDP +SLNPR  V  II EPL   K R + 
Sbjct: 71  LVTGLHRPTSGGIRFAPGKSGAPLSAQMIFQDPYASLNPRWRVKNIIAEPLRELKLRKTA 130

Query: 116 QQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDI 175
            +     EEL   VG+ P   ++ PH FSGGQRQRI+IARAL+S+P+ +V DEPTSALD+
Sbjct: 131 AEVTERVEELLGIVGLSPSDGEKFPHEFSGGQRQRISIARALASEPEFLVCDEPTSALDV 190

Query: 176 SVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPA 235
           SVQAQ+LNL+  LQ+  GLTY+ ISH++SV+R MSDR+AVMYLG+IVE GD +++   P 
Sbjct: 191 SVQAQVLNLMRRLQDELGLTYLFISHDLSVVRQMSDRIAVMYLGRIVEEGDTEELFAQPR 250

Query: 236 HPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFFYERCPLATHGCEVR-QSLA 294
           HPYTRLLL ++P I+ P          ++P     P GC F+ RCP+AT  C      + 
Sbjct: 251 HPYTRLLLQTIPNIEAP-NRNREPASGEVPSPLKPPSGCAFHPRCPVATARCSKEVPEVR 309

Query: 295 IREDGRELRC 304
           + ++G  + C
Sbjct: 310 VLQNGTRVAC 319